PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022754880.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 619aa MW: 69054.9 Da PI: 7.1064

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022754880.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.6	1.6e-06	334	348	12	26
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +GtC++G++C+F H+ XP_022754880.1 334 SGTCPRGEKCNFQHD 348 69************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 619 aa Download sequence
MMASPRILLC GGVLGRINQL FKRVNSVNKS AGPFDALFCV GQFFSDEQDR LDELMDYVEG 60 RAQIPLPTYF IGDYGFDAAK VLSVVSKNSA NQGFKMDGFK VCDNLFWLKG SGKFTLHGLS 120 VAYLSGRQLS NGQQFGTYSQ DDIDALRAFA EEPGIVDLFL SNEWPSGITN RATASDIPAG 180 ISDSSGSDST VSQLVAEIKP RYMMFEEFRI TCYHIAGTKG AFYAREPYSN VDAVHVTRFL 240 GLASVGNKEK QKFLHALSPI PSSAMSAAEI SAKPPNTTLS PYTLADQVDH PKEATKRTSD 300 SSLDSQYWRY DVSNKRQKHG NVDGNKVCFK FISSGTCPRG EKCNFQHDID AREQFLRGVC 360 LDFIIKGKCE KGPDCNFKHS LQDEGESYSR KRPGSGNSNA NRSKECWFCL SSPNVESHLV 420 TSIGENFYCA LAKGPLVQDH ILIIPVEHSP NTLSLPADSE IELGKFQNSL KMYYKNQGKE 480 AVFFEWISKR GTHANLQAVP VPSSKAAALK DIFSLAAEKL GFEFVTKRFN NNSEGRKWLR 540 TQFDKNFSCF YVELPEGSFL SHLVEENEKF PGQFGREVLA GLLNMADRAD WRNCTIGKEE 600 ETKLAENFKK RFEVFDPSQ

Sequence ? help Back to Top

Protein Sequence Length: 619 aa Download sequence

MMASPRILLC GGVLGRINQL FKRVNSVNKS AGPFDALFCV GQFFSDEQDR LDELMDYVEG  60
RAQIPLPTYF IGDYGFDAAK VLSVVSKNSA NQGFKMDGFK VCDNLFWLKG SGKFTLHGLS  120
VAYLSGRQLS NGQQFGTYSQ DDIDALRAFA EEPGIVDLFL SNEWPSGITN RATASDIPAG  180
ISDSSGSDST VSQLVAEIKP RYMMFEEFRI TCYHIAGTKG AFYAREPYSN VDAVHVTRFL  240
GLASVGNKEK QKFLHALSPI PSSAMSAAEI SAKPPNTTLS PYTLADQVDH PKEATKRTSD  300
SSLDSQYWRY DVSNKRQKHG NVDGNKVCFK FISSGTCPRG EKCNFQHDID AREQFLRGVC  360
LDFIIKGKCE KGPDCNFKHS LQDEGESYSR KRPGSGNSNA NRSKECWFCL SSPNVESHLV  420
TSIGENFYCA LAKGPLVQDH ILIIPVEHSP NTLSLPADSE IELGKFQNSL KMYYKNQGKE  480
AVFFEWISKR GTHANLQAVP VPSSKAAALK DIFSLAAEKL GFEFVTKRFN NNSEGRKWLR  540
TQFDKNFSCF YVELPEGSFL SHLVEENEKF PGQFGREVLA GLLNMADRAD WRNCTIGKEE  600
ETKLAENFKK RFEVFDPSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	1e-05	C3H family protein