PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022750950.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 947aa MW: 105879 Da PI: 8.888

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022750950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	186	207	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f+ C++G++C+F H XP_022750950.1 186 TQLCKDFMD-RRCRRGSQCQFLH 207 78*****.*********** PP
2	zf-CCCH	19.6	1.7e-06	311	332	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++fa+ G C+ G C+F+H XP_022750950.1 311 APCKYFAA-GNCRNGKYCRFSHH 332 699999.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 947 aa Download sequence
MSGSRKRSSK WDSKEERQYS LENIRDTAWP VKAGVSFHDR ESEHGYFSPE VGRNGNKCSV 60 VKASDIMKSK HELPSRESLP GSRGGKKDHN INVDCVKYWK TMTPLDGDET YKMEMSPGLD 120 DWRQQNHRHS PKTDWSSYHS FTHRSRSGSR SWSRSFSRSR SRSPVCGIRQ QSGFHERTRS 180 RSGVSTQLCK DFMDRRCRRG SQCQFLHQDI QSHENGWDNR QKRGADSKYF TPNDGKEYLI 240 KSGRSTDRYT DYLKGNYRRG VSCRFSHDGA SSGFSRVSRN EVSRERENNK RNRGTTPERD 300 GEREARRSND APCKYFAAGN CRNGKYCRFS HHVQACASPE RRSRGDKGGW GQSSVRVDKF 360 RDGAKLRDAD VSFNVEKTLA GPKWSDADVS NDVDKSWTAL KWSDIGPYSG ATKLSKDTNG 420 KMGASERRFS DWSINDRWQH DYDVRGKNSE TNVDYKTVDI DKDEAILRTI ESASVSVGVS 480 EPRGAEESLG DMEMSPDWNY RIHSSVKEYS HSSKSTPADS SLPAHENITV EASGQVPDGV 540 AILQPMLTEK SNFQQDHMMR GSSSVTLPCD SNAVSRNSSI SHIDLNFSTN ILPMPSFDQP 600 GPSSSSLPYA NLNAIVQSQV VIPSNEINMK GTQDSLLFQE EKPSNKLNIG DTKTLHGSSG 660 IQSTQSMVSN EQLTQLTNLS ASLAQLFGKR QQLPLPHVAL DAHDAMQVTF VNSGGPVEPD 720 SVPTVQPDQN IKLPKQYDPI SDSIEPVKTQ GTNTKPLGIS EPPVAQKNAA DGKPELWTNK 780 LLASSFVGST NGGDFHNDHG SKKQPDFDSC KPNQLEPVAS SEVTKENEVV EETKKAEEEN 840 KNGPSENIDA DDRTDEGKKI KDGKGIRAFK FALVEFVKDL LKPTWKEGQI GKEAYKNIVK 900 KVVDKVTATM QGTNIPQTPE KIEQYLSFSK SKLSKLVQAY VEKIQKS

Sequence ? help Back to Top

Protein Sequence Length: 947 aa Download sequence

MSGSRKRSSK WDSKEERQYS LENIRDTAWP VKAGVSFHDR ESEHGYFSPE VGRNGNKCSV  60
VKASDIMKSK HELPSRESLP GSRGGKKDHN INVDCVKYWK TMTPLDGDET YKMEMSPGLD  120
DWRQQNHRHS PKTDWSSYHS FTHRSRSGSR SWSRSFSRSR SRSPVCGIRQ QSGFHERTRS  180
RSGVSTQLCK DFMDRRCRRG SQCQFLHQDI QSHENGWDNR QKRGADSKYF TPNDGKEYLI  240
KSGRSTDRYT DYLKGNYRRG VSCRFSHDGA SSGFSRVSRN EVSRERENNK RNRGTTPERD  300
GEREARRSND APCKYFAAGN CRNGKYCRFS HHVQACASPE RRSRGDKGGW GQSSVRVDKF  360
RDGAKLRDAD VSFNVEKTLA GPKWSDADVS NDVDKSWTAL KWSDIGPYSG ATKLSKDTNG  420
KMGASERRFS DWSINDRWQH DYDVRGKNSE TNVDYKTVDI DKDEAILRTI ESASVSVGVS  480
EPRGAEESLG DMEMSPDWNY RIHSSVKEYS HSSKSTPADS SLPAHENITV EASGQVPDGV  540
AILQPMLTEK SNFQQDHMMR GSSSVTLPCD SNAVSRNSSI SHIDLNFSTN ILPMPSFDQP  600
GPSSSSLPYA NLNAIVQSQV VIPSNEINMK GTQDSLLFQE EKPSNKLNIG DTKTLHGSSG  660
IQSTQSMVSN EQLTQLTNLS ASLAQLFGKR QQLPLPHVAL DAHDAMQVTF VNSGGPVEPD  720
SVPTVQPDQN IKLPKQYDPI SDSIEPVKTQ GTNTKPLGIS EPPVAQKNAA DGKPELWTNK  780
LLASSFVGST NGGDFHNDHG SKKQPDFDSC KPNQLEPVAS SEVTKENEVV EETKKAEEEN  840
KNGPSENIDA DDRTDEGKKI KDGKGIRAFK FALVEFVKDL LKPTWKEGQI GKEAYKNIVK  900
KVVDKVTATM QGTNIPQTPE KIEQYLSFSK SKLSKLVQAY VEKIQKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-12	C3H family protein