PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022750002.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

ARF

Protein Properties

Length: 1085aa MW: 121184 Da PI: 6.5496

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022750002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.9	7e-22	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++ yr++++r++lt+GW+ Fv +++L +gD+v+F ++++ XP_022750002.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNKWTFRHVYRGQPKRHLLTTGWSVFVGSKRLFAGDSVLFI--RDEK 217 99***************************9445444.38**********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l ++++r+ XP_022750002.1 218 VQLQLGIRRA 227 8899999997 PP
2	Auxin_resp	125.4	3.8e-41	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_022750002.1 252 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1085 aa Download sequence
MKASPNGFLA NSAEGERKSI NSELWHACAG PLVSMPPVGS LVVYFPQGHS EQVAASMQKE 60 TDFIPSYPNL SSRLICMLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNKWTFRH 180 VYRGQPKRHL LTTGWSVFVG SKRLFAGDSV LFIRDEKVQL QLGIRRANKQ QPPLSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TTGERPSRVS IWEIEPVVTP 360 FYICPPPFFR PRFPKQPGMP DDESDIENAF KRAMPWLGDE FIMKDAPSSI FPGLSLVQWM 420 SMQQNNQFPA AQSGFFPSMV SSNPLHNNLS TDDPSKLLNF QAPPLPSSNM QFNKGNLNQV 480 NQLPQAPMTW PQQQQLQQLL QTSLNQHQQQ QSQQQLQQQQ PQQPQSQPQP QQQQQQQQAF 540 LPAQVNNRIV APNQITNQNL HQPAVYSPLQ QQQLLTSNSQ STQTILSANK TSYPLMSLPQ 600 DTQIQQLMEQ QPNLIHRQQQ QTQLQQSLSQ RTQQQAQIPQ LSQQGLSEQQ CQLQLLQKLQ 660 QQQQQQQQQS YQQLLSPAGS LLQPPTVQQQ STHQQNQPLQ QLPPSQSQTQ PLGSNSFSTS 720 MLMQPQQLSV NQPQCQNKPL MAMRTHSGLT VGDAPSCSTS PSTNNCQVSP SNFLNRSQQV 780 PSILATDPVV EPARTLVQEL QGKPDMQIKQ DLPTSKGPDQ SKYKSTVTDQ LEASSSGTSY 840 CLDAATIQHN FSLPTFLEGD VQSHPRNNLS FTANIDGFTP DTLLSRGYDS QKDLQNLLSN 900 YGGNPRDIDT ELSTAAISSQ SFGVPNIPFK TGCSNDAAIN ETGVLNGGLW ANQTQRMRTY 960 TKVQKRGSVG RSIDVYRYKG YDELRHDLAR MFGIEGQLEG PQSSDWKLVY VDHENDILLV 1020 GDDPWEEFVS CVQSIKILSS AEVQQMSLDG DLGNVAVPNQ ACSGTDSGNA WRGHYEDTSA 1080 ASFNR

Sequence ? help Back to Top

Protein Sequence Length: 1085 aa Download sequence

MKASPNGFLA NSAEGERKSI NSELWHACAG PLVSMPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPSYPNL SSRLICMLHN VTLHADPETD EVYAQMTLQP VNKYDKEALL ASDMGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNKWTFRH  180
VYRGQPKRHL LTTGWSVFVG SKRLFAGDSV LFIRDEKVQL QLGIRRANKQ QPPLSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TTGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PRFPKQPGMP DDESDIENAF KRAMPWLGDE FIMKDAPSSI FPGLSLVQWM  420
SMQQNNQFPA AQSGFFPSMV SSNPLHNNLS TDDPSKLLNF QAPPLPSSNM QFNKGNLNQV  480
NQLPQAPMTW PQQQQLQQLL QTSLNQHQQQ QSQQQLQQQQ PQQPQSQPQP QQQQQQQQAF  540
LPAQVNNRIV APNQITNQNL HQPAVYSPLQ QQQLLTSNSQ STQTILSANK TSYPLMSLPQ  600
DTQIQQLMEQ QPNLIHRQQQ QTQLQQSLSQ RTQQQAQIPQ LSQQGLSEQQ CQLQLLQKLQ  660
QQQQQQQQQS YQQLLSPAGS LLQPPTVQQQ STHQQNQPLQ QLPPSQSQTQ PLGSNSFSTS  720
MLMQPQQLSV NQPQCQNKPL MAMRTHSGLT VGDAPSCSTS PSTNNCQVSP SNFLNRSQQV  780
PSILATDPVV EPARTLVQEL QGKPDMQIKQ DLPTSKGPDQ SKYKSTVTDQ LEASSSGTSY  840
CLDAATIQHN FSLPTFLEGD VQSHPRNNLS FTANIDGFTP DTLLSRGYDS QKDLQNLLSN  900
YGGNPRDIDT ELSTAAISSQ SFGVPNIPFK TGCSNDAAIN ETGVLNGGLW ANQTQRMRTY  960
TKVQKRGSVG RSIDVYRYKG YDELRHDLAR MFGIEGQLEG PQSSDWKLVY VDHENDILLV  1020
GDDPWEEFVS CVQSIKILSS AEVQQMSLDG DLGNVAVPNQ ACSGTDSGNA WRGHYEDTSA  1080
ASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein