PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022748813.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

GRAS

Protein Properties

Length: 407aa MW: 45632.3 Da PI: 6.2656

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022748813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	88.8	8.5e-28	58	220	4	158
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaal.kl...fsevsPilkf 93 lL + A+ v ++++ a+++L+ l+s++g+++qR++ yf +AL++r+ +++ ++++ +++e + ++ +e++ +l ++ + P++++ XP_022748813.1 58 LLPASADKVGNRQFDHARKFLNLCDFLSSNAGNSIQRVVYYFSKALRERIDGETGATSSKArESREGELSHPDETIVSLnRAliaCFLKLPFIQV 152 567789999*****************************************65555555415555554444444443313333433345* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeel 158 +++ qaI e v+++++vH +D+ i G+Q aL+qaLa+R+e p l+iT+vg +++ +++ l XP_022748813.1 153 TQFSGLQAIIENVASAKKVHFVDLAIRSGAQCTALMQALATRDECPIeLLKITAVGTTSQTkmQATDL 220 ***************************************7665499****966654455554 PP
2	GRAS	89	7.4e-28	217	356	183	326
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 a++l+d++ + ++++ gEa+++ + l ++l ++ +les +++++k+l+P +vvv e e++h+s+ F+erf+eal++y+a+f + e + r XP_022748813.1 217 ATDLKDISEDIFELNDGEAVVIGSRTLLRHTLTQPDCLES----IIRMLKNLNPWIVVVKEFEVNHTSPIFVERFSEALSFYTAFFYCHEDCMDR 307 56788888899999****************99999999....*********************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326 +++r+ +E+++lg+ei+n+va++ ++r+ r + e Wr l + F p XP_022748813.1 308 CDQNRRILEAAYLGQEIQNIVAAKDEDRIFRDMKIEAWRTNLVAKQFAP 356 *************************************9998877765 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MASIRELSAA SLLKIARASF SKISSLECFD LYVLNKFFDG GCFNLSGDEI KDVELAILLP 60 ASADKVGNRQ FDHARKFLNL CDFLSSNAGN SIQRVVYYFS KALRERIDGE TGATSSKARE 120 SREGELSHPD ETIVSLNRAL IACFLKLPFI QVTQFSGLQA IIENVASAKK VHFVDLAIRS 180 GAQCTALMQA LATRDECPIE LLKITAVGTT SQTKMQATDL KDISEDIFEL NDGEAVVIGS 240 RTLLRHTLTQ PDCLESIIRM LKNLNPWIVV VKEFEVNHTS PIFVERFSEA LSFYTAFFYC 300 HEDCMDRCDQ NRRILEAAYL GQEIQNIVAA KDEDRIFRDM KIEAWRTNLV AKQFAPGNSC 360 ACYRNGQSLV VNLKETPILS LCDKGETYYC ARVQFGMTKE VRKSSLQ

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MASIRELSAA SLLKIARASF SKISSLECFD LYVLNKFFDG GCFNLSGDEI KDVELAILLP  60
ASADKVGNRQ FDHARKFLNL CDFLSSNAGN SIQRVVYYFS KALRERIDGE TGATSSKARE  120
SREGELSHPD ETIVSLNRAL IACFLKLPFI QVTQFSGLQA IIENVASAKK VHFVDLAIRS  180
GAQCTALMQA LATRDECPIE LLKITAVGTT SQTKMQATDL KDISEDIFEL NDGEAVVIGS  240
RTLLRHTLTQ PDCLESIIRM LKNLNPWIVV VKEFEVNHTS PIFVERFSEA LSFYTAFFYC  300
HEDCMDRCDQ NRRILEAAYL GQEIQNIVAA KDEDRIFRDM KIEAWRTNLV AKQFAPGNSC  360
ACYRNGQSLV VNLKETPILS LCDKGETYYC ARVQFGMTKE VRKSSLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	7e-35	GRAS family protein