PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022743531.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

HD-ZIP

Protein Properties

Length: 345aa MW: 37638.2 Da PI: 6.7633

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022743531.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	177	231	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_022743531.1 177 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKHLNLRPRQVEVWFQNRRARTK 231 778899***********************************************98 PP
2	HD-ZIP_I/II	127.7	5.1e-41	177	267	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_022743531.1 177 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKHLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 267 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MELALSLGDP SKPFSFLDKT PKLSNKDLGF CMGLGNGFIS QEKGDAFEGE SRGEAAKDAD 60 DKRVSSDPPL QLDLLPFSPV PRAQPSSQLS FLCLTDNQTG SSEAPGRGLD VNRLPLVAAA 120 DEAEEGAALS SPNSAVSSFQ MDFGLRHGNN GGKREVEVEA ERASSRVSDD DENGSTRKKL 180 RLSKEQSAFL EESFKEHNTL NPKQKLALAK HLNLRPRQVE VWFQNRRART KLKQTEVDCE 240 YLKRCCETLT EENRRLQKEL QELRALKTSQ PFYMQLPATT LTMCPSCERV ATTSTTAAAA 300 TTNVPTASAT VGSNSDAKTG VLPLTKTRGY PFSLQTRDPA PSPPA

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MELALSLGDP SKPFSFLDKT PKLSNKDLGF CMGLGNGFIS QEKGDAFEGE SRGEAAKDAD  60
DKRVSSDPPL QLDLLPFSPV PRAQPSSQLS FLCLTDNQTG SSEAPGRGLD VNRLPLVAAA  120
DEAEEGAALS SPNSAVSSFQ MDFGLRHGNN GGKREVEVEA ERASSRVSDD DENGSTRKKL  180
RLSKEQSAFL EESFKEHNTL NPKQKLALAK HLNLRPRQVE VWFQNRRART KLKQTEVDCE  240
YLKRCCETLT EENRRLQKEL QELRALKTSQ PFYMQLPATT LTMCPSCERV ATTSTTAAAA  300
TTNVPTASAT VGSNSDAKTG VLPLTKTRGY PFSLQTRDPA PSPPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	182	TRKKLRL
2	226	234	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-91	HD-ZIP family protein