PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022739369.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 949aa MW: 105488 Da PI: 9.0002

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022739369.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.3	3.1e-09	214	235	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f++ G C++G++C+F H XP_022739369.1 214 TQLCKDFMA-GRCRRGSQCHFLH 235 78*****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 949 aa Download sequence
MENVIGFGGR RDHTAFIRIS ATGEMSGSRK RGSKWDSKEE RQHSLENVRD SAWPAKAGMS 60 FHDRESEHGY FSPEVGRNCN KWSVAKASDM MKSKHGLPSR ESLPGSRGGQ KDDNINVDCV 120 KNWKTTTLWD GDETYSMKMS PGLEDWRQQN RHHSPKSDWS RSYSMSPIYS FTHRSRSRSW 180 SRSRSRSRSR SPVRGIRRQS GFHERTRSRS GVSTQLCKDF MAGRCRRGSQ CHFLHQDIQS 240 DEDGWDNRQK RGGMSKYFTP NDGKDYLIKS GRSTDCCADY LKGNCRKGAS CRFAHDGASD 300 GFSRGSINEV SRERENDKRN RVTTPERHVE HEARRSMDVP CKYFAAGNCR SGKYCRFSHH 360 GEARASPERR SRGDRGGWGQ TSVSVDKLLG GAKSRDADAS FNVEKSWNAP KWSNANASNE 420 GEKSWSGPKW GDADASNEVD KSWTGSKWSD TGAYLGANKL NKETNGKMGA SEPRFSDWSL 480 DDRWQHDFDA SGKNGESNVH YKTVDIDKDE AIPRKIENAG VSMGAGESLG DMEMSPEWNY 540 GIHSSVKIQH SRSSKSTPVD SSVPAQEKNM TKDASGWVHD ELAASQPLST EKSNFQQDHM 600 MRGSSAVALP CDSNDISRNT SVSRIDLNFS TNNLSMPSFD QPGPSSSSLP YSSLGAVGQS 660 QVAIPSNEVN MKVMQNSLLF QEEKPSNKLN IGDTNLLPGN SGTQSTQKMV TSFPNSGGPV 720 EPDSVPTVQP GQDIIFQEQY DPISDSIGPV KTQDTNTKAL VISVHPVSQK NTTDGKPELS 780 TNKLLSSSHV DSTNGGDFPN DHSSKREPDF DSHKLNQLKP LASSEVTKEN GVEETKKAED 840 ENKNGPSENI DAEDRTDEGK KSKDGKGIRA FKFALVEFVK DLLKPTWKEG QIGKEAYKNI 900 VKKVVDKVTA TMQGTNIPQT PEKIDQYLSF SKPKLSKLVQ AYVEKFQKS

Sequence ? help Back to Top

Protein Sequence Length: 949 aa Download sequence

MENVIGFGGR RDHTAFIRIS ATGEMSGSRK RGSKWDSKEE RQHSLENVRD SAWPAKAGMS  60
FHDRESEHGY FSPEVGRNCN KWSVAKASDM MKSKHGLPSR ESLPGSRGGQ KDDNINVDCV  120
KNWKTTTLWD GDETYSMKMS PGLEDWRQQN RHHSPKSDWS RSYSMSPIYS FTHRSRSRSW  180
SRSRSRSRSR SPVRGIRRQS GFHERTRSRS GVSTQLCKDF MAGRCRRGSQ CHFLHQDIQS  240
DEDGWDNRQK RGGMSKYFTP NDGKDYLIKS GRSTDCCADY LKGNCRKGAS CRFAHDGASD  300
GFSRGSINEV SRERENDKRN RVTTPERHVE HEARRSMDVP CKYFAAGNCR SGKYCRFSHH  360
GEARASPERR SRGDRGGWGQ TSVSVDKLLG GAKSRDADAS FNVEKSWNAP KWSNANASNE  420
GEKSWSGPKW GDADASNEVD KSWTGSKWSD TGAYLGANKL NKETNGKMGA SEPRFSDWSL  480
DDRWQHDFDA SGKNGESNVH YKTVDIDKDE AIPRKIENAG VSMGAGESLG DMEMSPEWNY  540
GIHSSVKIQH SRSSKSTPVD SSVPAQEKNM TKDASGWVHD ELAASQPLST EKSNFQQDHM  600
MRGSSAVALP CDSNDISRNT SVSRIDLNFS TNNLSMPSFD QPGPSSSSLP YSSLGAVGQS  660
QVAIPSNEVN MKVMQNSLLF QEEKPSNKLN IGDTNLLPGN SGTQSTQKMV TSFPNSGGPV  720
EPDSVPTVQP GQDIIFQEQY DPISDSIGPV KTQDTNTKAL VISVHPVSQK NTTDGKPELS  780
TNKLLSSSHV DSTNGGDFPN DHSSKREPDF DSHKLNQLKP LASSEVTKEN GVEETKKAED  840
ENKNGPSENI DAEDRTDEGK KSKDGKGIRA FKFALVEFVK DLLKPTWKEG QIGKEAYKNI  900
VKKVVDKVTA TMQGTNIPQT PEKIDQYLSF SKPKLSKLVQ AYVEKFQKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	190	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	9e-19	C3H family protein