PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022739367.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

C3H

Protein Properties

Length: 977aa MW: 108378 Da PI: 8.8277

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022739367.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.2e-09	202	223	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f++ G C++G++C+F H XP_022739367.1 202 TQLCKDFMA-GRCRRGSQCHFLH 223 78*****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 977 aa Download sequence
MENVIGFGGR RDHTAFIRIS ATGEMSGSRK RGSKWDSKEE RQHSLENVRD SAWPAKAGMS 60 FHDRESEHGY FSPEVGRNCN KWSVAKASDM MKSKHGLPSR ESLPGSRGGQ KDDNINVDCV 120 KNWKTTTLWD GDETYSMKMS PGLEDWRQQN RHHSPKSDWS RSYRSRSWSR SRSRSRSRSP 180 VRGIRRQSGF HERTRSRSGV STQLCKDFMA GRCRRGSQCH FLHQDIQSDE DGWDNRQKRG 240 GMSKYFTPND GKDYLIKSGR STDCCADYLK GNCRKGASCR FAHDGASDGF SRGSINEVSR 300 ERENDKRNRV TTPERHVEHE ARRSMDVPCK YFAAGNCRSG KYCRFSHHGE ARASPERRSR 360 GDRGGWGQTS VSVDKLLGGA KSRDADASFN VEKSWNAPKW SNANASNEGE KSWSGPKWGD 420 ADASNEVDKS WTGSKWSDTG AYLGANKLNK ETNGKMGASE PRFSDWSLDD RWQHDFDASG 480 KNGESNVHYK TVDIDKDEAI PRKIENAGVS MGAGESLGDM EMSPEWNYGI HSSVKIQHSR 540 SSKSTPVDSS VPAQEKNMTK DASGWVHDEL AASQPLSTEK SNFQQDHMMR GSSAVALPCD 600 SNDISRNTSV SRIDLNFSTN NLSMPSFDQP GPSSSSLPYS SLGAVGQSQV AIPSNEVNMK 660 VMQNSLLFQE EKPSNKLNIG DTNLLPGNSG TQSTQKMVSS EQLTQLTNLS ASLAQLFGKG 720 QQLPQLHVAL TAHDPMQVTS FPNSGGPVEP DSVPTVQPGQ DIIFQEQYDP ISDSIGPVKT 780 QDTNTKALVI SVHPVSQKNT TDGKPELSTN KLLSSSHVDS TNGGDFPNDH SSKREPDFDS 840 HKLNQLKPLA SSEVTKENGV EETKKAEDEN KNGPSENIDA EDRTDEGKKS KDGKGIRAFK 900 FALVEFVKDL LKPTWKEGQI GKEAYKNIVK KVVDKVTATM QGTNIPQTPE KIDQYLSFSK 960 PKLSKLVQAY VEKFQKS

Sequence ? help Back to Top

Protein Sequence Length: 977 aa Download sequence

MENVIGFGGR RDHTAFIRIS ATGEMSGSRK RGSKWDSKEE RQHSLENVRD SAWPAKAGMS  60
FHDRESEHGY FSPEVGRNCN KWSVAKASDM MKSKHGLPSR ESLPGSRGGQ KDDNINVDCV  120
KNWKTTTLWD GDETYSMKMS PGLEDWRQQN RHHSPKSDWS RSYRSRSWSR SRSRSRSRSP  180
VRGIRRQSGF HERTRSRSGV STQLCKDFMA GRCRRGSQCH FLHQDIQSDE DGWDNRQKRG  240
GMSKYFTPND GKDYLIKSGR STDCCADYLK GNCRKGASCR FAHDGASDGF SRGSINEVSR  300
ERENDKRNRV TTPERHVEHE ARRSMDVPCK YFAAGNCRSG KYCRFSHHGE ARASPERRSR  360
GDRGGWGQTS VSVDKLLGGA KSRDADASFN VEKSWNAPKW SNANASNEGE KSWSGPKWGD  420
ADASNEVDKS WTGSKWSDTG AYLGANKLNK ETNGKMGASE PRFSDWSLDD RWQHDFDASG  480
KNGESNVHYK TVDIDKDEAI PRKIENAGVS MGAGESLGDM EMSPEWNYGI HSSVKIQHSR  540
SSKSTPVDSS VPAQEKNMTK DASGWVHDEL AASQPLSTEK SNFQQDHMMR GSSAVALPCD  600
SNDISRNTSV SRIDLNFSTN NLSMPSFDQP GPSSSSLPYS SLGAVGQSQV AIPSNEVNMK  660
VMQNSLLFQE EKPSNKLNIG DTNLLPGNSG TQSTQKMVSS EQLTQLTNLS ASLAQLFGKG  720
QQLPQLHVAL TAHDPMQVTS FPNSGGPVEP DSVPTVQPGQ DIIFQEQYDP ISDSIGPVKT  780
QDTNTKALVI SVHPVSQKNT TDGKPELSTN KLLSSSHVDS TNGGDFPNDH SSKREPDFDS  840
HKLNQLKPLA SSEVTKENGV EETKKAEDEN KNGPSENIDA EDRTDEGKKS KDGKGIRAFK  900
FALVEFVKDL LKPTWKEGQI GKEAYKNIVK KVVDKVTATM QGTNIPQTPE KIDQYLSFSK  960
PKLSKLVQAY VEKFQKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	178	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-18	C3H family protein