PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022731937.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

HB-PHD

Protein Properties

Length: 695aa MW: 78040.7 Da PI: 9.4014

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022731937.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.8	1.1e-10	470	514	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +e L ++F++n ps+ +e L+k+lgL+ ++V WF+N R+ XP_022731937.1 470 PAAVEKLRQVFAENELPSRVIKENLSKELGLEPEKVNKWFKNARY 514 567899*************************************97 PP
2	PHD	35.4	2.4e-12	207	262	1	51
SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ d+ ++++vlCd +C+ +fH+kCl+++l++e++p g w+C+ C++k XP_022731937.1 207 FCAKCKLRDAfpDNDIVLCDgTCNCAFHQKCLDPPLDTENIPPGdqGWFCKFCECK 262 699999944455******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MRGSGKKLID YESAKPSSSK REAGSKPIAA LKLKKRSKIS HGRVRKPKHH VKKVGSTLLK 60 RKVTASISKR TASDVSSSRK VGGETNKKVS SKKLDPSKLG GKNASFGSLE ENGKKDNGDV 120 GIKKLSKKKK KGQKDKVELD EASRLQGRTS REKIRPEKEL QRAKKQILKC KLGIREAIRQ 180 LDSLSSVGSI EGSVIAPDGS VYHEHIFCAK CKLRDAFPDN DIVLCDGTCN CAFHQKCLDP 240 PLDTENIPPG DQGWFCKFCE CKMEIIEAMN AHIGTNFSVD SHWQDIFKDE AAFPDDAIAS 300 LNPEEDWPSD DSEDDDYDPD RRENSCRIGG TATDGDESED TDSSISLSWS VDGEDFSGSG 360 RCENHDSGAD SSETSDGEII CGRRRRRAVD YKKLYDEMFG KDAPTFEQVS EDEDWGPGKR 420 KRREKESDAA STLMTLYESE TKFINADATE MIRQLPSDLK SRRPFFRIPP AAVEKLRQVF 480 AENELPSRVI KENLSKELGL EPEKVNKWFK NARYLALKSR KVEGADHLQS SSPRVSKEPG 540 MEAPERKDPD IMALEDMLEP TLLHTPKILK KKVRKSPNSK LLDTSLERSP HNGLSVVSPT 600 NSNKVGKELS DDLILKKLLN VKKKREKKRV SIIVGGGLQE FELEMERLCR AKVRLENMKQ 660 TLLRLETSKA RKLNKKQLHE ESFIYIPIAE LKEKV

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MRGSGKKLID YESAKPSSSK REAGSKPIAA LKLKKRSKIS HGRVRKPKHH VKKVGSTLLK  60
RKVTASISKR TASDVSSSRK VGGETNKKVS SKKLDPSKLG GKNASFGSLE ENGKKDNGDV  120
GIKKLSKKKK KGQKDKVELD EASRLQGRTS REKIRPEKEL QRAKKQILKC KLGIREAIRQ  180
LDSLSSVGSI EGSVIAPDGS VYHEHIFCAK CKLRDAFPDN DIVLCDGTCN CAFHQKCLDP  240
PLDTENIPPG DQGWFCKFCE CKMEIIEAMN AHIGTNFSVD SHWQDIFKDE AAFPDDAIAS  300
LNPEEDWPSD DSEDDDYDPD RRENSCRIGG TATDGDESED TDSSISLSWS VDGEDFSGSG  360
RCENHDSGAD SSETSDGEII CGRRRRRAVD YKKLYDEMFG KDAPTFEQVS EDEDWGPGKR  420
KRREKESDAA STLMTLYESE TKFINADATE MIRQLPSDLK SRRPFFRIPP AAVEKLRQVF  480
AENELPSRVI KENLSKELGL EPEKVNKWFK NARYLALKSR KVEGADHLQS SSPRVSKEPG  540
MEAPERKDPD IMALEDMLEP TLLHTPKILK KKVRKSPNSK LLDTSLERSP HNGLSVVSPT  600
NSNKVGKELS DDLILKKLLN VKKKREKKRV SIIVGGGLQE FELEMERLCR AKVRLENMKQ  660
TLLRLETSKA RKLNKKQLHE ESFIYIPIAE LKEKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	420	425	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-140	HB-PHD family protein