PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022729004.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

ARF

Protein Properties

Length: 1113aa MW: 123104 Da PI: 6.6944

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022729004.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.8	1.7e-22	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_022729004.1 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 227 99***************************9445444.38********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_022729004.1 228 QQLLLGIRRA 237 889**997 PP
2	Auxin_resp	117.9	8.1e-39	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++s+F+v+YnPr+s+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+++ XP_022729004.1 262 AAHATANNSPFTVFYNPRTSPSEFVIPLAKYYKAVYnNQISPGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNMQ 345 79******************************98799****************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1113 aa Download sequence
MKMPATGAGA APNAAAPNLS EGGAPEKSIN PELWQACAGP LVNLPAAGTH VVYFPQGHSE 60 QVAASMKKDV DAQIPNYPNL PSKLLCLLHN VTLHADPDTD EVYAQMTLQP VSSFDKDALL 120 RSDLSLRANK PPPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD 180 LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ 240 PTNLSSSVLS SDSMHIGILA AAAHATANNS PFTVFYNPRT SPSEFVIPLA KYYKAVYNNQ 300 ISPGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKNSQ WRNMQVGWDE STAGERRNRV 360 SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDDSSDLDN LFKRPMPWLG DDICMKDSQA 420 LPGLSLVQWM NMQHNPVLAN TIQPNVMQSL SGSVMQNFAG ADISRQMGLS AQQIPQPNNL 480 QFNAQRLPQQ VQQLDQLPKL PSTMNTLGSI MQPQQLSDMT QQSRQNLIAQ TLPSNQVQAQ 540 VLQPQTLVQS NNILLQQQTS TQIHQLPRSL PQNLQQQRQQ QQHLMGPNQQ QNLMHSQLPD 600 PASQLLQMPD NQIQFQLLQK LQQQQQSLLA QQSALQQPAQ LAQPQDQQRQ LLDASQSFST 660 SVATSQVLEM PQMSPTLLPQ SNVVTQQMSK NNSRANVRFS QPPLQSKLQQ QQPGMLPEIP 720 GHVGPSPTTA TNQLSTAVSS VMTGAVIAAQ SVITDDNPSC STSPSTNCPN VLQPLINSRA 780 HRITGLGDDM AQSAATVLNP NTLETMSSNA NINKELQQKS DVKPLLNISK SQNLGLFAPQ 840 NYINGVNAQA DYLDTSSSTT SVCLSQNDVH LQQNNLLTYN PQTMLLRDTS QDGEVQADPR 900 NNASYSTNME GQIGMTMNSD NLLTKGMMGL GKDFSNNLSS GGMLTTYENP KDVQQELSSS 960 MVSQSFGVPD MTFNSIDSTV NDSSFINRAA WAPQPQFQRM RTYTKVYKRG AVGRSIDIAR 1020 YSGYDQLKQD LARRFGIEGQ LEDRGRIGWK LVYVDHENDV LLVGDDPWDE FVNCVRCIKI 1080 LSPQEVQQMS LDGDFGNSVL PNQACSSSGN GNA

Sequence ? help Back to Top

Protein Sequence Length: 1113 aa Download sequence

MKMPATGAGA APNAAAPNLS EGGAPEKSIN PELWQACAGP LVNLPAAGTH VVYFPQGHSE  60
QVAASMKKDV DAQIPNYPNL PSKLLCLLHN VTLHADPDTD EVYAQMTLQP VSSFDKDALL  120
RSDLSLRANK PPPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDNVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHATANNS PFTVFYNPRT SPSEFVIPLA KYYKAVYNNQ  300
ISPGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKNSQ WRNMQVGWDE STAGERRNRV  360
SIWEIEPVTA PFFICPPPFF RSKRPRQPGM PDDDSSDLDN LFKRPMPWLG DDICMKDSQA  420
LPGLSLVQWM NMQHNPVLAN TIQPNVMQSL SGSVMQNFAG ADISRQMGLS AQQIPQPNNL  480
QFNAQRLPQQ VQQLDQLPKL PSTMNTLGSI MQPQQLSDMT QQSRQNLIAQ TLPSNQVQAQ  540
VLQPQTLVQS NNILLQQQTS TQIHQLPRSL PQNLQQQRQQ QQHLMGPNQQ QNLMHSQLPD  600
PASQLLQMPD NQIQFQLLQK LQQQQQSLLA QQSALQQPAQ LAQPQDQQRQ LLDASQSFST  660
SVATSQVLEM PQMSPTLLPQ SNVVTQQMSK NNSRANVRFS QPPLQSKLQQ QQPGMLPEIP  720
GHVGPSPTTA TNQLSTAVSS VMTGAVIAAQ SVITDDNPSC STSPSTNCPN VLQPLINSRA  780
HRITGLGDDM AQSAATVLNP NTLETMSSNA NINKELQQKS DVKPLLNISK SQNLGLFAPQ  840
NYINGVNAQA DYLDTSSSTT SVCLSQNDVH LQQNNLLTYN PQTMLLRDTS QDGEVQADPR  900
NNASYSTNME GQIGMTMNSD NLLTKGMMGL GKDFSNNLSS GGMLTTYENP KDVQQELSSS  960
MVSQSFGVPD MTFNSIDSTV NDSSFINRAA WAPQPQFQRM RTYTKVYKRG AVGRSIDIAR  1020
YSGYDQLKQD LARRFGIEGQ LEDRGRIGWK LVYVDHENDV LLVGDDPWDE FVNCVRCIKI  1080
LSPQEVQQMS LDGDFGNSVL PNQACSSSGN GNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein