PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022728022.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

M-type_MADS

Protein Properties

Length: 374aa MW: 42249.6 Da PI: 5.7884

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022728022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	75.6	3.7e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA+ELS+LCd+++ +++fs+tgk XP_022728022.1 9 KRLESYSNRQVTYSKRRTGILKKAKELSILCDIDIVLLMFSPTGK 53 689****************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IDIVLLMFSP TGKPTLFHGE 60 RSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLCAT SQSVEEMTNE 120 VSVLQAQLTE VQKRLSYWSN PDKIDNVEHL RQMEDSLRES IECIRIHKEN YGKHHLMSLE 180 CNSQFQNGIP LPMMIGGTQE AQPVTWLPNN ENQHMLLHNE PNFLPHQDTE CSADGSLAGY 240 SGFFVSGKQT EIGSSGQVDN VVQESNALNE LGSNACLSVE LGEQYFYPPY SASNLQDNEK 300 LRPEMEANLQ GNPAVFQVIN NFEIPRPMYN SGHQAWVSSS GPCSIAMFDG NSYQQQTDST 360 FMNQTPPSGQ CHNL

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IDIVLLMFSP TGKPTLFHGE  60
RSNIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQDFLCAT SQSVEEMTNE  120
VSVLQAQLTE VQKRLSYWSN PDKIDNVEHL RQMEDSLRES IECIRIHKEN YGKHHLMSLE  180
CNSQFQNGIP LPMMIGGTQE AQPVTWLPNN ENQHMLLHNE PNFLPHQDTE CSADGSLAGY  240
SGFFVSGKQT EIGSSGQVDN VVQESNALNE LGSNACLSVE LGEQYFYPPY SASNLQDNEK  300
LRPEMEANLQ GNPAVFQVIN NFEIPRPMYN SGHQAWVSSS GPCSIAMFDG NSYQQQTDST  360
FMNQTPPSGQ CHNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-114	M-type_MADS family protein