PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022717706.1
Organism
Durio zibethinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
Family C3H
Protein Properties Length: 309aa    MW: 34022.6 Da    PI: 8.241
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022717706.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-0891115126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ GtC+y  +C+FaH+
  XP_022717706.1  91 FKTKLCCKFRA-GTCPYITNCNFAHS 115
                     69*********.*************8 PP
2zf-CCCH18.92.7e-06165190126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  XP_022717706.1 165 YKGRHCKKFYTEEGCPYGDSCTFLHD 190
                     78888********************7 PP
3zf-CCCH43.36.2e-14241266126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_022717706.1 241 WKTRICNKWELTGYCPFGNKCHFAHG 266
                     8************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MDYSRENVVH VIPTNGPDNW VPNSTDPSVW ATEEDYRVWN NQETSSDTPS NSSYDQRHPQ  60
SRSNSEQPPN KKSRNSQELN SRSKAIGKMF FKTKLCCKFR AGTCPYITNC NFAHSIEELR  120
RPPPNWQEIV AAHEEEKGIL SEPREEYQIP SLGSSSFTGE TQRSYKGRHC KKFYTEEGCP  180
YGDSCTFLHD EQSKNRESVA ISLGPGGYGG GAGGGGGGGG GGSGGGGGGN GNGSNAKPSN  240
WKTRICNKWE LTGYCPFGNK CHFAHGVAAS FTWGVVFVSF AFVFGVIRMN IYCYYRITPI  300
WRGPCGCRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-101C3H family protein