PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022159767.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 342aa MW: 37670.5 Da PI: 7.4774

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022159767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	86	110	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ XP_022159767.1 86 FKTKLCCKFRA-GTCPYITNCNFAHS 110 69*******.***********8 PP
2	zf-CCCH	18.7	3.1e-06	161	186	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_022159767.1 161 YKGRHCKKFYTEEGCPYGDSCTFLHD 186 78888********************7 PP
3	zf-CCCH	41.9	1.7e-13	223	248	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_022159767.1 223 WKTRICNKWELTGYCPFGNKCHFAHG 248 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MDYSGGNVVH VIPGTSTDNW PGEVWATEDE YRAWNNGGDG DTPSNSSYDQ RQSQSRSGSE 60 PPNKKSRNSQ DVTSSNRSKA IGKMFFKTKL CCKFRAGTCP YITNCNFAHS IEELRRPPPN 120 WQQEIVAAHE EEKAVLLEPR EEFQIPSLGT SNFGSESQRS YKGRHCKKFY TEEGCPYGDS 180 CTFLHDEQSK NRESVAISLG PGGYSGCGGG SSGNGSNIKP SNWKTRICNK WELTGYCPFG 240 NKCHFAHGAA ELHRYGGGLM ETEARDSSSA PPDPKQGVLP KAPGDTVVAS VPSVPHSDVY 300 HVAVPSQRST IVIQRAGQRT HQKWKGPDKI SRIYGDWIDD NE

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MDYSGGNVVH VIPGTSTDNW PGEVWATEDE YRAWNNGGDG DTPSNSSYDQ RQSQSRSGSE  60
PPNKKSRNSQ DVTSSNRSKA IGKMFFKTKL CCKFRAGTCP YITNCNFAHS IEELRRPPPN  120
WQQEIVAAHE EEKAVLLEPR EEFQIPSLGT SNFGSESQRS YKGRHCKKFY TEEGCPYGDS  180
CTFLHDEQSK NRESVAISLG PGGYSGCGGG SSGNGSNIKP SNWKTRICNK WELTGYCPFG  240
NKCHFAHGAA ELHRYGGGLM ETEARDSSSA PPDPKQGVLP KAPGDTVVAS VPSVPHSDVY  300
HVAVPSQRST IVIQRAGQRT HQKWKGPDKI SRIYGDWIDD NE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-131	C3H family protein