PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022158571.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 613aa MW: 64963.5 Da PI: 9.5211

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022158571.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_022158571.1 71 FICEVCNKGFQREQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	12.4	0.00047	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_022158571.1 147 WKCDKCSKRYAVQSDWKAHSKTC 169 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MAASSSSVPV FGVREEVAQR NNNPQLQQQQ HSNSSTAAPP PKKKRNQPGT PNPDAEVIAL 60 SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSTKEPKRK VYLCPEPSCV 120 HHDPSRALGD LTGIKKHYSR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAQ ESARHPPNLG SAIGSHLYGT NTNNVGLTLS QVPQLSSLQD 240 HPNISQSAHD VLRLGGARAG QFSHLLPPSI GSSFRPPQQA MPSSSSSAAF FLTDQTNQNS 300 FHEDHQSQSQ QGLFGNKGFH GLMQFPSDIQ SHTSSNNNPA TTATNLFNLG FISNPTGDNN 360 NTNSNSSNNN NNLQSSLLNQ FSGGNNGSNE GGAANIFSVN IMGDHQISSG AVPSLYSNAT 420 GVSVGVAGGS GGGMPHMSAT ALLQKAAQLG STTSSSNTTA TLLRTFGSSS SSGGKPSDRM 480 LFPPSYGGVF GENENNLQDL MNSFASGGSA SGIFGAGNGM NSFGGFDSGG NRTTNMETLE 540 DPKLQQNLTA VSMGGTDRLT RDFLGVGQIV RSMSSGGGGG GGGHKQPPQG IVLDPSESNS 600 APSSQAFGGG NYQ

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MAASSSSVPV FGVREEVAQR NNNPQLQQQQ HSNSSTAAPP PKKKRNQPGT PNPDAEVIAL  60
SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSTKEPKRK VYLCPEPSCV  120
HHDPSRALGD LTGIKKHYSR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARHPPNLG SAIGSHLYGT NTNNVGLTLS QVPQLSSLQD  240
HPNISQSAHD VLRLGGARAG QFSHLLPPSI GSSFRPPQQA MPSSSSSAAF FLTDQTNQNS  300
FHEDHQSQSQ QGLFGNKGFH GLMQFPSDIQ SHTSSNNNPA TTATNLFNLG FISNPTGDNN  360
NTNSNSSNNN NNLQSSLLNQ FSGGNNGSNE GGAANIFSVN IMGDHQISSG AVPSLYSNAT  420
GVSVGVAGGS GGGMPHMSAT ALLQKAAQLG STTSSSNTTA TLLRTFGSSS SSGGKPSDRM  480
LFPPSYGGVF GENENNLQDL MNSFASGGSA SGIFGAGNGM NSFGGFDSGG NRTTNMETLE  540
DPKLQQNLTA VSMGGTDRLT RDFLGVGQIV RSMSSGGGGG GGGHKQPPQG IVLDPSESNS  600
APSSQAFGGG NYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-119	C2H2 family protein