PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022158356.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family C3H
Protein Properties Length: 291aa    MW: 30678.9 Da    PI: 9.3622
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022158356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07100125227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C+ +     Ck+G++C+FaHg+
  XP_022158356.1 100 KTRMCNKYNSAEGCKFGEKCHFAHGE 125
                     899*******99************96 PP
2zf-CCCH35.61.6e-11259282226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     kt+lC++fa+ G C +G+rC+FaHg
  XP_022158356.1 259 KTKLCDNFAK-GSCTFGERCHFAHG 282
                     8*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MDTRKRGRPE VGLNANGGFK MSKQEMESLS TGVGSKSKPC TKFYSTTGCP FGEGCHFLHY  60
VPGGYNTVAQ MMNLTPIPPA ARNMAAPPPM SNGSANPVVK TRMCNKYNSA EGCKFGEKCH  120
FAHGEWELGK PLAPSHDDLR AMGHIPNRLP SRMEAAPSGP AASFGASATA KISVDASLAG  180
AIIGKGGINS KQICRQTGAK LSIRDHESDP NLRNIELEGT FDQIKEASAM VRELIVTVSM  240
AGPPKSAGGT AAPSGNNHKT KLCDNFAKGS CTFGERCHFA HGAAELRKSG A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-87C3H family protein