PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022156207.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family GRAS
Protein Properties Length: 310aa    MW: 34447.2 Da    PI: 6.7094
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022156207.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.98.3e-107829673374
            GRAS  73 nsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                     ++++ ++a+++f+ +sP++kfsh+taNqaI ea+eg+ervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s+e le+tg+rL++
  XP_022156207.1   8 HTQKIASAFQVFNGISPFVKFSHFTANQAIQEAFEGQERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SQEVLEATGKRLTE 98 
                     56788999*********************************************************************....9************* PP

            GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                     fAe+lg+pf+f + va+++ +l+le+L+v+++Ea+aV+++   h+l++ ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++
  XP_022156207.1  99 FAEKLGLPFDFFP-VAEKIGNLDLEKLNVSKREAVAVHWMQ--HSLYEVTGSDSN----TLWLLQRLAPKVVTVVEQDLSH-TGSFLGRFVEAIH 185
                     *************.7*************************9..999988888888....**********************.889********** PP

            GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                     yysalfdsl +++++eseer+ vE++ll+rei+nv+a  g +r  + + +++Wre+l+++GFk ++l  +aa+qa lll +++sdgy++ e++g+
  XP_022156207.1 186 YYSALFDSLGVSYGEESEERHLVEQQLLSREIRNVLAVGGPSRSGEVK-FQNWREKLQQSGFKGISLAGNAATQATLLLGMFPSDGYTLVEDNGT 279
                     ******************************************888776.********************************************** PP

            GRAS 358 lvlgWkdrpLvsvSaWr 374
                     l lgWkd  L+++SaW+
  XP_022156207.1 280 LKLGWKDLCLLTASAWK 296
                     ****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
PALVPHSHTQ KIASAFQVFN GISPFVKFSH FTANQAIQEA FEGQERVHII DLDIMQGLQW  60
PGLFHILASR PGGPPYVRLT GLGTSQEVLE ATGKRLTEFA EKLGLPFDFF PVAEKIGNLD  120
LEKLNVSKRE AVAVHWMQHS LYEVTGSDSN TLWLLQRLAP KVVTVVEQDL SHTGSFLGRF  180
VEAIHYYSAL FDSLGVSYGE ESEERHLVEQ QLLSREIRNV LAVGGPSRSG EVKFQNWREK  240
LQQSGFKGIS LAGNAATQAT LLLGMFPSDG YTLVEDNGTL KLGWKDLCLL TASAWKPPFH  300
HAATNHIPRY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein