PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022156094.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family GRAS
Protein Properties Length: 470aa    MW: 52986.9 Da    PI: 5.7832
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022156094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2982.4e-911094621374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL+ecA a+s ++l +aq++L +l ++asp++ ++ +Rl++yf+ A+++r+++s  ++++ l          ++  ++++l+++vsP++kf+
  XP_022156094.1 109 LISLLFECAVAISVDNLVEAQRMLLELTQMASPYAvSSXERLVTYFAAAMSSRVMNSILGICSPLLNY-------KSINNSFQLLNNVSPFIKFA 196
                     5799*******************************99*******************877777655333.......33456899************ PP

            GRAS  95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     hl++Nq Ile+++ + +rvHiiD+di+qGlQWp+LlqaLa +   + p ++RiT++g       e l  tg+rL+++A+ l+++fe+n+ ++ ++
  XP_022156094.1 197 HLVCNQSILESLSLHdDRVHIIDLDIMQGLQWPPLLQALAMKIddNRPRHVRITAMGT----TLELLVDTGKRLSDIARLLELSFEYNP-IVAKV 286
                     *************9889************************99767788*********....99*************************.6999* PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++e ++ ++++gE+ +Vn+v   hrl+d + +  +    ++ l+++  Pkv+++veq++ + ++ Fl+rf+++l+yysa+fdsl a  ++++ +
  XP_022156094.1 287 GKVEASMVKLRRGETRVVNWVR--HRLYDATEPDWK----TMGLIQQWGPKVFTLVEQDVCY-GGVFLDRFVSSLHYYSAIFDSLGAFSSSDDCD 374
                     *********************9..***977777777....********************99.789**********************9****** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     r+ vE+ +l rei+n++a  ++e      ++++Wr+ l+++ + +vp+s + ++qa l+l++++ ++g++v + +g  + l Wk+ +L+++SaW+
  XP_022156094.1 375 RNXVEHNILYREISNILAIGEDE------KFREWRSELRKC-LMEVPMSANSMAQAWLMLNMFSnNQGFSVAQGQGGTLeLRWKNTSLYTASAWT 462
                     ******************99887......9*********99.678*******************9*******99888888**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MAPPLLPSPH HCSISPMKLG RPDIVNGYLL QSLHPHEPWD FGLPSSSTSL TPIFHNHTFN  60
LHCNEFPYSV DHVNDLLESS AEETANGEEL RVHADHGRSK DVEDHGLTLI SLLFECAVAI  120
SVDNLVEAQR MLLELTQMAS PYAVSSXERL VTYFAAAMSS RVMNSILGIC SPLLNYKSIN  180
NSFQLLNNVS PFIKFAHLVC NQSILESLSL HDDRVHIIDL DIMQGLQWPP LLQALAMKID  240
DNRPRHVRIT AMGTTLELLV DTGKRLSDIA RLLELSFEYN PIVAKVGKVE ASMVKLRRGE  300
TRVVNWVRHR LYDATEPDWK TMGLIQQWGP KVFTLVEQDV CYGGVFLDRF VSSLHYYSAI  360
FDSLGAFSSS DDCDRNXVEH NILYREISNI LAIGEDEKFR EWRSELRKCL MEVPMSANSM  420
AQAWLMLNMF SNNQGFSVAQ GQGGTLELRW KNTSLYTASA WTTCSSETTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-103GRAS family protein