PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022155119.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family GRAS
Protein Properties Length: 664aa    MW: 75643.5 Da    PI: 6.3619
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022155119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.44.3e-1162946613373
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++cA+avs+ d++ a +lL++++++asp+gd +qRla+yf+++L++rla  ++ ly  ++++ets    +e l+a+++f +++P+ ++s++ 
  XP_022155119.1 294 TLLTQCAQAVSNYDKRTAVELLNQIRQHASPSGDGNQRLAHYFAKGLETRLAA-GTPLYMPFASNETS---AAEILKAYQMFIKACPFRRMSYFY 384
                     69**************************************************9.99999888888777...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN++Il+ +e+ +r+HiiDf+i +GlQWp+L+q L+sRp+gp++lRiTg++ p++g   +e++e+tg+rL++++++++vpfe +v +a+++++++
  XP_022155119.1 385 ANRTILKLAEKVTRLHIIDFGILYGLQWPCLIQRLSSRPGGPAKLRITGIELPQPGfrPTERVEQTGRRLEHYCKRFNVPFEHKV-LAQKWDSVR 478
                     *******************************************************9****************************9.6******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +e+L+++++E ++V ++++l++++de+v  +s+rd+vLkl+++++P+++++   + + n++ F +rf eal yys+lfd++ea++pr++ +r+  
  XP_022155119.1 479 YEDLNIDRNELTIVTCMFRLKNVPDETVVANSPRDTVLKLIRRINPDLFIHEITNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRHLC 573
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     E+e+lgr+i+nvvaceg er+er et+++W+ r ++aGFk+vpl+++  k ++ ++++ + + + ++++  ++++gWk+r + ++S+W
  XP_022155119.1 574 EKEILGRDIMNVVACEGLERVERPETYKQWQVRNTRAGFKQVPLDQHLLKHVENIVNTEYHHDFVIDQDGSWMLQGWKGRIIDALSCW 661
                     **********************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    
MDNNLLDDFP NFWNNFNFHP HVSNGFTANR EIVDPIMIPA NSPPSSSEGE SPDSHDTSNT  60
TLKYITEMLM DEEEDLKTKP CMLLDGLALQ AAEKSFYDVL GQKYPPSPIG TCDSSGKGGE  120
EEFEPVSEYP SVFAPFANPL LGGQDSFLEM QFIGHFRQGL EEASKFLPIN GRFGTIDLES  180
ESPPSISSGG VAFSSSVGNG LLREKKNRER EDSDEELRLA KYSATYADDN NSLCDLFDEV  240
LLCRGESRRP QSCGSDDSSE NEAKKKSGRR WKGKKRGSRK KEKDKSMGIV DLWTLLTQCA  300
QAVSNYDKRT AVELLNQIRQ HASPSGDGNQ RLAHYFAKGL ETRLAAGTPL YMPFASNETS  360
AAEILKAYQM FIKACPFRRM SYFYANRTIL KLAEKVTRLH IIDFGILYGL QWPCLIQRLS  420
SRPGGPAKLR ITGIELPQPG FRPTERVEQT GRRLEHYCKR FNVPFEHKVL AQKWDSVRYE  480
DLNIDRNELT IVTCMFRLKN VPDETVVANS PRDTVLKLIR RINPDLFIHE ITNGSFNTPF  540
FNTRFKEALF YYSSLFDMYE ATVPRDNPQR HLCEKEILGR DIMNVVACEG LERVERPETY  600
KQWQVRNTRA GFKQVPLDQH LLKHVENIVN TEYHHDFVID QDGSWMLQGW KGRIIDALSC  660
WVVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270281RWKGKKRGSRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-175GRAS family protein