PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022154293.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 710aa MW: 79290.7 Da PI: 5.4874

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022154293.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23	1.3e-07	120	142	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff++ G C GdrC F+Hgp XP_022154293.1 120 VPCIFFQK-GLCLKGDRCAFMHGP 142 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence
MVGGGPQVLE QQQQSLPQPL SAAEEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV 60 NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHATNPSSQ VPHQTSSIPS TPVNSSKQAV 120 PCIFFQKGLC LKGDRCAFMH GPSPASTNKV SQTAANAQTG EPLSVKKVSG GTQRGSQEPK 180 IPQANFSKPI GGAPFKLAMK DETVPSKIGN INEKSGPPAE VADGGPRYKA TNSHPILNES 240 SLSRANRLQQ SHVSDEHGLQ NGKDSDEFLK ESSPGFDVLV DDELRGSDYY GSEEQYGRTR 300 GHEGTNMISI NDYDIGHSAD YKMIADVDHD VYNDVIDYDY DRLDSRQGQY GWEQHRTPSE 360 KLSLGSAQME RRLFPKSNSP EHVQNTDLRY RLNKQRRGTG LRSVINNENA ASRPVEERNY 420 RTSRRDSHPS QESSGSNRLR GRIKLPRMPS PVKNNGLRPE RDLNRGRHWG RLSPGRSPSL 480 SHQGSIRDEV KGRLEEDCNN ERRNFNGFSS RRDRMDGMSN FAAPKSLAEL KGEKQVVSKE 540 HQSLGKRKGF DNEQSGGELS FEGPKSLSEI LKKKRRVKAA VDLDSAERES GERSVERSTT 600 TPLYKQTGLE GTKSAPAETF GQEEEIIDIS HQQSSQPLHS TDEHESEAFD ETLEEDHEYE 660 ADDQRDGEYE YDQVDDGEYN YEEGDNVDPE GEYMEDEDGD DFAKKIGVMS

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence

MVGGGPQVLE QQQQSLPQPL SAAEEEAVKR NTDCVYFLAS PLTCKKGSEC EYRHSEYARV  60
NPRDCWFWLN GNCLNPKCSF RHPPLDGLVG TPHATNPSSQ VPHQTSSIPS TPVNSSKQAV  120
PCIFFQKGLC LKGDRCAFMH GPSPASTNKV SQTAANAQTG EPLSVKKVSG GTQRGSQEPK  180
IPQANFSKPI GGAPFKLAMK DETVPSKIGN INEKSGPPAE VADGGPRYKA TNSHPILNES  240
SLSRANRLQQ SHVSDEHGLQ NGKDSDEFLK ESSPGFDVLV DDELRGSDYY GSEEQYGRTR  300
GHEGTNMISI NDYDIGHSAD YKMIADVDHD VYNDVIDYDY DRLDSRQGQY GWEQHRTPSE  360
KLSLGSAQME RRLFPKSNSP EHVQNTDLRY RLNKQRRGTG LRSVINNENA ASRPVEERNY  420
RTSRRDSHPS QESSGSNRLR GRIKLPRMPS PVKNNGLRPE RDLNRGRHWG RLSPGRSPSL  480
SHQGSIRDEV KGRLEEDCNN ERRNFNGFSS RRDRMDGMSN FAAPKSLAEL KGEKQVVSKE  540
HQSLGKRKGF DNEQSGGELS FEGPKSLSEI LKKKRRVKAA VDLDSAERES GERSVERSTT  600
TPLYKQTGLE GTKSAPAETF GQEEEIIDIS HQQSSQPLHS TDEHESEAFD ETLEEDHEYE  660
ADDQRDGEYE YDQVDDGEYN YEEGDNVDPE GEYMEDEDGD DFAKKIGVMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	572	576	KKKRR
2	572	577	KKKRRV
3	573	578	KKRRVK