PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022154259.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 577aa MW: 63293.7 Da PI: 7.3398

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022154259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.8e-07	154	174	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_022154259.1 154 PCPDFRK-GACRRGDMCEYAHG 174 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MVDGNGHRPV NVIVSPLRHA ELKSTLTELL KTNGLSGEGN LAVLRGAGNS HSPCPSSPLN 60 VPSSASELVS SPTKSKLSDF PMYSGSEKKE YPVDLSLPDI KNSIYSTDEF RMYSFKVRPC 120 SRAYSHDWTE CPFVHPGENA RRRDPRKFHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL 180 HPAQYRTRLC KDGTNCSRRV CFFAHTTDEL RPLYVSTGSA VPSPRSCTSG MDYNTVMNLL 240 PGSPSSVPVM SPSPFTPPMS PSANGMSHSS MAWPQPNVPA LHLPGSNIQS SRLRSSLSAR 300 DIPVEDFDFL GDFDMQQQQL LNDFNCLSQP PLSSNSLNRS GRLKTMTPSN LDDLFSAESS 360 SPRYSDQALA SAVFSPTHKS AVINQFQQQQ NMLSPINTNF SPKNVDHPLL QASFGVPSSG 420 RMSPRNLEPI SPMGSRLSML AQREKQQQFR SLSSRELGAN SSIVGSPASS WSKWGASNGR 480 PDWAVNADEM GKLRRSSSFE LGNNGEEPDL SWVQSLVKES PTEIKEKQAQ PGSGADSYVS 540 SGESSSNVNS QMESVDHTAL GAWLEQMQLD HLVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MVDGNGHRPV NVIVSPLRHA ELKSTLTELL KTNGLSGEGN LAVLRGAGNS HSPCPSSPLN  60
VPSSASELVS SPTKSKLSDF PMYSGSEKKE YPVDLSLPDI KNSIYSTDEF RMYSFKVRPC  120
SRAYSHDWTE CPFVHPGENA RRRDPRKFHY SCVPCPDFRK GACRRGDMCE YAHGVFECWL  180
HPAQYRTRLC KDGTNCSRRV CFFAHTTDEL RPLYVSTGSA VPSPRSCTSG MDYNTVMNLL  240
PGSPSSVPVM SPSPFTPPMS PSANGMSHSS MAWPQPNVPA LHLPGSNIQS SRLRSSLSAR  300
DIPVEDFDFL GDFDMQQQQL LNDFNCLSQP PLSSNSLNRS GRLKTMTPSN LDDLFSAESS  360
SPRYSDQALA SAVFSPTHKS AVINQFQQQQ NMLSPINTNF SPKNVDHPLL QASFGVPSSG  420
RMSPRNLEPI SPMGSRLSML AQREKQQQFR SLSSRELGAN SSIVGSPASS WSKWGASNGR  480
PDWAVNADEM GKLRRSSSFE LGNNGEEPDL SWVQSLVKES PTEIKEKQAQ PGSGADSYVS  540
SGESSSNVNS QMESVDHTAL GAWLEQMQLD HLVAQQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein