PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022154258.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 700aa MW: 76401.5 Da PI: 6.7101

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022154258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	277	297	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_022154258.1 277 PCPDFRK-GACRRGDMCEYAHG 297 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MNNLTVETED AFSSLLELAA NDDIDGFKKS IERDPSGIDE IGLWYGRLRG SKQMTNEQRT 60 PLMVAATYGS IEVLKLILSL SFADVNRSVG LDRSTALHCA ASGGAANAVD IVKRLLAAGA 120 DPNMVDGNGH RPVNVIVSPL RHAELKSTLT ELLKTNGLSG EGNLAVLRGA GNSHSPCPSS 180 PLNVPSSASE LVSSPTKSKL SDFPMYSGSE KKEYPVDLSL PDIKNSIYST DEFRMYSFKV 240 RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD FRKGACRRGD MCEYAHGVFE 300 CWLHPAQYRT RLCKDGTNCS RRVCFFAHTT DELRPLYVST GSAVPSPRSC TSGMDYNTVM 360 NLLPGSPSSV PVMSPSPFTP PMSPSANGMS HSSMAWPQPN VPALHLPGSN IQSSRLRSSL 420 SARDIPVEDF DFLGDFDMQQ QQLLNDFNCL SQPPLSSNSL NRSGRLKTMT PSNLDDLFSA 480 ESSSPRYSDQ ALASAVFSPT HKSAVINQFQ QQQNMLSPIN TNFSPKNVDH PLLQASFGVP 540 SSGRMSPRNL EPISPMGSRL SMLAQREKQQ QFRSLSSREL GANSSIVGSP ASSWSKWGAS 600 NGRPDWAVNA DEMGKLRRSS SFELGNNGEE PDLSWVQSLV KESPTEIKEK QAQPGSGADS 660 YVSSGESSSN VNSQMESVDH TALGAWLEQM QLDHLVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MNNLTVETED AFSSLLELAA NDDIDGFKKS IERDPSGIDE IGLWYGRLRG SKQMTNEQRT  60
PLMVAATYGS IEVLKLILSL SFADVNRSVG LDRSTALHCA ASGGAANAVD IVKRLLAAGA  120
DPNMVDGNGH RPVNVIVSPL RHAELKSTLT ELLKTNGLSG EGNLAVLRGA GNSHSPCPSS  180
PLNVPSSASE LVSSPTKSKL SDFPMYSGSE KKEYPVDLSL PDIKNSIYST DEFRMYSFKV  240
RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPD FRKGACRRGD MCEYAHGVFE  300
CWLHPAQYRT RLCKDGTNCS RRVCFFAHTT DELRPLYVST GSAVPSPRSC TSGMDYNTVM  360
NLLPGSPSSV PVMSPSPFTP PMSPSANGMS HSSMAWPQPN VPALHLPGSN IQSSRLRSSL  420
SARDIPVEDF DFLGDFDMQQ QQLLNDFNCL SQPPLSSNSL NRSGRLKTMT PSNLDDLFSA  480
ESSSPRYSDQ ALASAVFSPT HKSAVINQFQ QQQNMLSPIN TNFSPKNVDH PLLQASFGVP  540
SSGRMSPRNL EPISPMGSRL SMLAQREKQQ QFRSLSSREL GANSSIVGSP ASSWSKWGAS  600
NGRPDWAVNA DEMGKLRRSS SFELGNNGEE PDLSWVQSLV KESPTEIKEK QAQPGSGADS  660
YVSSGESSSN VNSQMESVDH TALGAWLEQM QLDHLVAQQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein