PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022154108.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

RAV

Protein Properties

Length: 359aa MW: 40818.6 Da PI: 7.8844

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022154108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.9	1.6e-10	52	99	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++kGV +grW A+I+ + +r++lg+f ++ +Aa a++ a+ kl+ XP_022154108.1 52 KFKGVV-PQHNGRWGAQIYA------NhQRIWLGTFKSERDAAMAYDSAAIKLRT 99 789997.5559****999......44******99**********996 PP
2	B3	92.8	2.4e-29	177	267	1	84
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsdv+k++rlv+pkk+a +h ++ +++++++d+ ++W+++++y+++s+++v+t+GW++Fvk+++Lk++D+++F+ XP_022154108.1 177 FQKELTPSDVGKLNRLVIPKKYAVKHfpyisesADENGDDIEIVFYDTAMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYT 267 99**************************99855567899**********************************************94 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MEDEASSSLL SHVKTHQPAD EASDSNFSDC ALPAAKRPRL VHDLNVLAAV GKFKGVVPQH 60 NGRWGAQIYA NHQRIWLGTF KSERDAAMAY DSAAIKLRTR DSHRNFPWTR RSIEEPNFQI 120 NFSTDAVLSM IKDGSYSSKF SAYLRTKSQI HDSDFQNPRS GFENGDGDGH FSCSHLFQKE 180 LTPSDVGKLN RLVIPKKYAV KHFPYISESA DENGDDIEIV FYDTAMKTWK FRYCYWRSSQ 240 SFVFTRGWNR FVKEKKLKAN DIITFYTYES CGGGSDENGG SVTLNFIDVI YKKSEDRESE 300 SSCLADKNEK LQSGLGLNRE KDCGKKKKEV EEILNSGVMN PNEEKIGEKR IRLFGVHID

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MEDEASSSLL SHVKTHQPAD EASDSNFSDC ALPAAKRPRL VHDLNVLAAV GKFKGVVPQH  60
NGRWGAQIYA NHQRIWLGTF KSERDAAMAY DSAAIKLRTR DSHRNFPWTR RSIEEPNFQI  120
NFSTDAVLSM IKDGSYSSKF SAYLRTKSQI HDSDFQNPRS GFENGDGDGH FSCSHLFQKE  180
LTPSDVGKLN RLVIPKKYAV KHFPYISESA DENGDDIEIV FYDTAMKTWK FRYCYWRSSQ  240
SFVFTRGWNR FVKEKKLKAN DIITFYTYES CGGGSDENGG SVTLNFIDVI YKKSEDRESE  300
SSCLADKNEK LQSGLGLNRE KDCGKKKKEV EEILNSGVMN PNEEKIGEKR IRLFGVHID

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	319	328	REKDCGKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51120.1	1e-100	RAV family protein