PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022153576.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 491aa MW: 54527.9 Da PI: 7.793

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022153576.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	100	122	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022153576.1 100 FVCEICNKGFQRDQNLQLHRRGH 122 89*******************88 PP
2	zf-C2H2	16.3	2.8e-05	177	199	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H++t+ XP_022153576.1 177 WKCEKCSKKYAVQSDWKAHQKTC 199 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MGISNITGEK EEHHGNLSSG NSVEGEEQEV EQNKHHDQLL NHFLYGSPNG DDDQTNSHIG 60 STSSLQQQRV KKKRNLPGTP DPNAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR 120 GHNLPWKLRQ RTNDGEVKKR VYVCPEPTCV HHNPARALGD LTGIKKHFSR KHGEKKWKCE 180 KCSKKYAVQS DWKAHQKTCG TREYKCDCGT LFSRRDSFIT HRAFCDALTE ENNKLKQGVV 240 VNSTIEPISV SIPPKLSQFG KSMMPEFNLY DHKNPLKSLP WQLDNSNPFP APVAATASGG 300 LFMAGPGSSN SSSFSSLQLS SAAASRFSYL HDSKNSCFQV SGSGTAALVT SATALLQKAA 360 QIGATASSIG GLNSPLEVQH SDQQDMVGID MGMYGHMMTT KEQDNCSSSN SSFLVHEKGQ 420 WSVSRFSDGD VSGESPMMTL DLLGEGGWRL RQLQEDQNRH HHRQTMPIMK HFELQNFDHG 480 DPNVDKSIFE F

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MGISNITGEK EEHHGNLSSG NSVEGEEQEV EQNKHHDQLL NHFLYGSPNG DDDQTNSHIG  60
STSSLQQQRV KKKRNLPGTP DPNAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR  120
GHNLPWKLRQ RTNDGEVKKR VYVCPEPTCV HHNPARALGD LTGIKKHFSR KHGEKKWKCE  180
KCSKKYAVQS DWKAHQKTCG TREYKCDCGT LFSRRDSFIT HRAFCDALTE ENNKLKQGVV  240
VNSTIEPISV SIPPKLSQFG KSMMPEFNLY DHKNPLKSLP WQLDNSNPFP APVAATASGG  300
LFMAGPGSSN SSSFSSLQLS SAAASRFSYL HDSKNSCFQV SGSGTAALVT SATALLQKAA  360
QIGATASSIG GLNSPLEVQH SDQQDMVGID MGMYGHMMTT KEQDNCSSSN SSFLVHEKGQ  420
WSVSRFSDGD VSGESPMMTL DLLGEGGWRL RQLQEDQNRH HHRQTMPIMK HFELQNFDHG  480
DPNVDKSIFE F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-95	C2H2 family protein