PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022153057.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

NF-YC

Protein Properties

Length: 280aa MW: 30891.4 Da PI: 4.8801

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022153057.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.9	5.3e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++++ ++fdfl d+v + XP_022153057.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCIQTFNVFDFLKDVVGK 86 5789*************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQDLCDRT YEITLKRGAK 60 TMNSLHLKQC IQTFNVFDFL KDVVGKVPDL GGSDAAGEDR FISKRRKVVD EDDNDSEEES 120 KRSKMAEVGH SSSGRGRGRG RGRGRGRSSR NVEKDTAMHY ENFEDDLEVP NHPSDKLNKT 180 VPGNGVAEIR IGNGNIPGDK AGEPSVRNFD LNVNLDEDGD STTVAVAAPT GSPAKLPTDT 240 KHDEYPGWSV ADMEKMAIDP IQLANLNKTI DDEEDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	144	RGRGRGRGRG
2	135	145	RGRGRGRGRGR
3	137	146	RGRGRGRGRG
4	137	147	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	9e-66	NF-YC family protein