PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022152942.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 292aa MW: 34324.7 Da PI: 10.0629

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022152942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.8	4.4e-09	10	35	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++ G C++Gd+C++ H++ XP_022152942.1 10 GRANCPFYSKVGACRHGDQCSRLHPK 35 689*********************96 PP
2	zf-CCCH	21.5	4.1e-07	148	169	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Cr++ + C++G+ C+F+H XP_022152942.1 148 AACRRYEE-NMCNFGPYCNFMHL 169 67****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MASISGTQMG RANCPFYSKV GACRHGDQCS RLHPKPLISP TLLLSNMYQR LDTISPGVDA 60 RGNPIDPRKI QRHFEEFYED IFEEMSKYGE IESLNVCDNL GDHMVGNVYV QYREEGQAAN 120 ALXNLRDRYY GGLLIRVDFS TVTDFIVAAC RRYEENMCNF GPYCNFMHLK RISWYAYFLH 180 FPFYVLRSRL FRTRSHSXDR HRNYEQRSYG RHGHSRRYDD RDAYHESRSR RSRSTSPGRR 240 RSRSRSLRGR RNRSPVREGS GERRARFEQW NREGGQQANH NNANFDGSKS SH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	250	RSRSRSLRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	2e-30	C3H family protein