PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022152817.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family GRAS
Protein Properties Length: 412aa    MW: 46670.2 Da    PI: 7.5011
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022152817.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS397.41.5e-121414111373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++lL++cA+++s++d+  a++lL+ ls +++p+gd+++Rl+++f  AL +rl +   + +++lp  +ts+++ + + a +  +++++P+++fsh
  XP_022152817.1  41 MRQLLIRCAHFISQSDFLSASRLLSLLSSNSTPYGDATERLVHHFSAALFRRLPS---SSSSSLPLAPTSKDDGVGVEACYLSLNQITPFIRFSH 132
                     589***************************************************9...6677889999998899999999999************ PP

            GRAS  96 ltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl. 181
                     ltaNqaIleaveg           vH++Dfdi++G+QWp+L+qaLa+R  ++p+lRiT+ g+    + ++l++tg+rL+kfA++lg++f+f++l 
  XP_022152817.1 133 LTANQAILEAVEGGgqssskkqGIVHVVDFDIMHGVQWPPLMQALAER-FPTPMLRITATGR----DLNSLHKTGDRLSKFAQSLGLRFQFHPLl 222
                     ***********98766676666779**********************9.789**********....9**************************97 PP

            GRAS 182 ..vak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         + + + l + +L + p+E+laVn+vl lhrl +      +  + +L+ +k l+Pkvv+++e+ea+ n++ F++rfleal++ys +fdslea
  XP_022152817.1 223 llN-DhDHHRLIPAALTLFPDETLAVNCVLYLHRLSK------DDLRLLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEA 310
                     633.34788899***********************83......335569********************************************** PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                     +lp++s+er  vE++++grei +vv+ eg++rr+rhe++e+W+ +l++ GF+++pls +a +qaklllr ++ s+gy+++  ++sl+lgW++rpL
  XP_022152817.1 311 TLPPNSRERLAVEQVWFGREIDDVVSGEGTKRRQRHERYESWEIMLRSLGFSNIPLSPFALSQAKLLLRLHYpSEGYHLQILHDSLFLGWQNRPL 405
                     *********************************************************************************************** PP

            GRAS 368 vsvSaW 373
                     +svS+W
  XP_022152817.1 406 FSVSSW 411
                     ****** PP
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MLMDPLNHNS SSSPHHHQEE ESTSSDLQFH PITASSNSIH MRQLLIRCAH FISQSDFLSA  60
SRLLSLLSSN STPYGDATER LVHHFSAALF RRLPSSSSSS LPLAPTSKDD GVGVEACYLS  120
LNQITPFIRF SHLTANQAIL EAVEGGGQSS SKKQGIVHVV DFDIMHGVQW PPLMQALAER  180
FPTPMLRITA TGRDLNSLHK TGDRLSKFAQ SLGLRFQFHP LLLLNDHDHH RLIPAALTLF  240
PDETLAVNCV LYLHRLSKDD LRLLLHKIKA LNPKVVTIAE KEANFNHPLF MQRFLEALNH  300
YSLIFDSLEA TLPPNSRERL AVEQVWFGRE IDDVVSGEGT KRRQRHERYE SWEIMLRSLG  360
FSNIPLSPFA LSQAKLLLRL HYPSEGYHLQ ILHDSLFLGW QNRPLFSVSS WH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-120GRAS family protein