PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022152275.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 321aa MW: 35821.5 Da PI: 8.3339

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022152275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.5	5.9e-15	236	261	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg XP_022152275.1 236 FKTELCNKWQETGSCPYGDHCQFAHG 261 79***********************8 PP
2	zf-CCCH	18.5	3.6e-06	274	298	1	25
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H XP_022152275.1 274 YKTEVCRMVLA-GvVCPYGHRCHFRH 298 9********.66********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MHKSTTSATA MSSSSQLKSQ HRTNDVYASL YNSPIFAPKQ SVPVSLPLTL YGDSNHRVVQ 60 DHQEMVNRHS LCLTHLREAT EEADALRQEN IHLRSINHEL SKHLSLLIHA SVQKQYASPD 120 QAPSFNLVEG FGGLCVGEKG ASSSTWEEVC DESPTSVMEG GRVEGVEVER FSLPKSISVR 180 SNGYLKIAQG GTTQGGKIRT SSRPRTASPA KQKVYVQGVK EEEKPLELEV YNQGMFKTEL 240 CNKWQETGSC PYGDHCQFAH GIEELRPVIR HPRYKTEVCR MVLAGVVCPY GHRCHFRHAL 300 TDQERLMGPL KPSARTPKLD R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	2e-78	C3H family protein