PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022151367.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

HD-ZIP

Protein Properties

Length: 369aa MW: 40117.5 Da PI: 5.199

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022151367.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.9e-18	215	269	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_022151367.1 215 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 269 788899***********************************************98 PP
2	HD-ZIP_I/II	127	8e-41	215	305	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+ke +eLr +lk XP_022151367.1 215 RKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELR-ALK 305 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MELALSLGDT PTNNNKPFGF LSKPSKLSSS SSASPFMALG FCVGLARDSA SASASGSGSG 60 SASIHDDQGR EVREEDDDEE EDEEDDDDER IILPGSGSGS DPPVQLDLLP PAPVPRSHHS 120 SSSHLPFPWL SDHYGGAERV LDVNRLPAVG PAEETDDRAA AAAAGMSSPN SAVSSFQMDF 180 GVRNGGGSKR SSDFEMETER ASSRISDDDE NGSARKKLRL SKEQSAFLEE SFKEHSTLNP 240 KQKLALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL RRCCETLTEE NRRLQKELQE 300 LRALKTSQPF YMQLPATTLT MCPSCERVAT TAPAPVAKTT SATATNPSAL CLANKPRILP 360 FPHLHQAAS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MELALSLGDT PTNNNKPFGF LSKPSKLSSS SSASPFMALG FCVGLARDSA SASASGSGSG  60
SASIHDDQGR EVREEDDDEE EDEEDDDDER IILPGSGSGS DPPVQLDLLP PAPVPRSHHS  120
SSSHLPFPWL SDHYGGAERV LDVNRLPAVG PAEETDDRAA AAAAGMSSPN SAVSSFQMDF  180
GVRNGGGSKR SSDFEMETER ASSRISDDDE NGSARKKLRL SKEQSAFLEE SFKEHSTLNP  240
KQKLALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL RRCCETLTEE NRRLQKELQE  300
LRALKTSQPF YMQLPATTLT MCPSCERVAT TAPAPVAKTT SATATNPSAL CLANKPRILP  360
FPHLHQAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	272	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	7e-75	HD-ZIP family protein