PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022149889.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

ARF

Protein Properties

Length: 1109aa MW: 122427 Da PI: 6.2463

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022149889.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.5	1.1e-22	136	237	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_022149889.1 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVAKDLHDTVWNFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFI--RDEK 227 99***************************9445444.38********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_022149889.1 228 QQLLLGIRRA 237 889**997 PP
2	Auxin_resp	119.5	2.7e-39	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW++S+Wr+L+ XP_022149889.1 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSaNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQ 345 79*******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1109 aa Download sequence
MKTPANSAGA ASTTAATNSC EGGMEKKLIN PELWQACAGP LVNLPPAGYH VVYFPQGHSE 60 QVAASLKKDV DAQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VPSFDKDALL 120 RSDLSLKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVAKD 180 LHDTVWNFRH IYRGQPKRHL LTTGWSLFVS GKRLLAGDSV LFIRDEKQQL LLGIRRANRQ 240 PTNLSSSVLS TDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAVSANQ 300 ISLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKGSQ WRNLQVGWDE STGGERRNRV 360 SIWEIEPVIA PFFICPPPFL RSKRPRQPGM PDDDSSDLDG IFKRTMFGDD FCMKDPQGYP 420 GLNLVQWMNM QNPSLSNSMQ PNYMQSFSGS MLQNLGGVDI SRQLGLSATQ IPQSNNIQFN 480 AQRLLSQAQQ LDQLPKLPSN MSSLVAEQLD DMSQQTRQNL INQNAVSSQI QAQIMQQPHG 540 NGILQQPNSL QNQQLQRSLP QNLQMQQQHQ HQQILGQNQQ QNVNPSPLPE QLNNQLQMSD 600 NQVQIQMLQK LQQQQQSLLA QQSALQPVQL AQLPEQQRPL IDVSQSYSRS MSSNQMLEMA 660 QTTPIVVPPS NTLPQQAAKS NSQTNSRFSN QHLQPKLPQL QQPPPSTVIT DMSRQMGLPP 720 SQTNNQLSAA TSSVITGAAG AGQSGITDDI PSCSTSPSTN NCPSLIQPVT NGRVHRSTGL 780 VEDVAQSAAT IFSPNALDNT MSPNANLVKD FPQKTAVKPS LNISKNQSHG IFAQQTFLGG 840 AVAQTDFLDT SSSTTSACLS QNDAQLQQQN NMMSFNSQPM LFRDSTQDLE VAADLHNIPY 900 EANVDGQLVA QLNSDPLLNN KGIGGLGKDF SNNFSSGGML TTYDVQKDPQ QEISSSLVSQ 960 SFGIPDMTFN SMDSTINDNA FLNRNQWAPP PPFQRMRTYT KVYKRGAVGR SIDITRYSGY 1020 DELKQDLARR FGIEGQLEDR QKIGWKLVYV DHENDVLLVG DDPWDDFVNC VRSIKILSPQ 1080 EVQQMSLDDD FGNGVLPNQA CSSSDGGNA

Sequence ? help Back to Top

Protein Sequence Length: 1109 aa Download sequence

MKTPANSAGA ASTTAATNSC EGGMEKKLIN PELWQACAGP LVNLPPAGYH VVYFPQGHSE  60
QVAASLKKDV DAQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VPSFDKDALL  120
RSDLSLKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVAKD  180
LHDTVWNFRH IYRGQPKRHL LTTGWSLFVS GKRLLAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS TDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAVSANQ  300
ISLGMRFRMM FETEESGTRR YMGTITGISD LDPVRWKGSQ WRNLQVGWDE STGGERRNRV  360
SIWEIEPVIA PFFICPPPFL RSKRPRQPGM PDDDSSDLDG IFKRTMFGDD FCMKDPQGYP  420
GLNLVQWMNM QNPSLSNSMQ PNYMQSFSGS MLQNLGGVDI SRQLGLSATQ IPQSNNIQFN  480
AQRLLSQAQQ LDQLPKLPSN MSSLVAEQLD DMSQQTRQNL INQNAVSSQI QAQIMQQPHG  540
NGILQQPNSL QNQQLQRSLP QNLQMQQQHQ HQQILGQNQQ QNVNPSPLPE QLNNQLQMSD  600
NQVQIQMLQK LQQQQQSLLA QQSALQPVQL AQLPEQQRPL IDVSQSYSRS MSSNQMLEMA  660
QTTPIVVPPS NTLPQQAAKS NSQTNSRFSN QHLQPKLPQL QQPPPSTVIT DMSRQMGLPP  720
SQTNNQLSAA TSSVITGAAG AGQSGITDDI PSCSTSPSTN NCPSLIQPVT NGRVHRSTGL  780
VEDVAQSAAT IFSPNALDNT MSPNANLVKD FPQKTAVKPS LNISKNQSHG IFAQQTFLGG  840
AVAQTDFLDT SSSTTSACLS QNDAQLQQQN NMMSFNSQPM LFRDSTQDLE VAADLHNIPY  900
EANVDGQLVA QLNSDPLLNN KGIGGLGKDF SNNFSSGGML TTYDVQKDPQ QEISSSLVSQ  960
SFGIPDMTFN SMDSTINDNA FLNRNQWAPP PPFQRMRTYT KVYKRGAVGR SIDITRYSGY  1020
DELKQDLARR FGIEGQLEDR QKIGWKLVYV DHENDVLLVG DDPWDDFVNC VRSIKILSPQ  1080
EVQQMSLDDD FGNGVLPNQA CSSSDGGNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein