PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022149754.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 436aa MW: 47316.6 Da PI: 6.934

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022149754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.2	5.6e-13	47	72	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C+yG++C+F+H+ XP_022149754.1 47 PGEPDCLYYMRTGSCSYGSNCRFNHP 72 5789*********************9 PP
2	zf-CCCH	36.1	1.1e-11	91	115	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++Ck++H++ XP_022149754.1 91 QPDCEYFLKTGTCKYGGSCKYHHPR 115 789********************96 PP
3	zf-CCCH	37.2	4.9e-12	138	160	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G +CkF+H++ XP_022149754.1 138 SCPYYLRTGSCKFGVSCKFNHPQ 160 6********************97 PP
4	zf-CCCH	39.8	7.6e-13	278	303	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ CkF+H++ XP_022149754.1 278 DQPECRYFMNNGTCKYGSDCKFHHPK 303 689*********************96 PP
5	zf-CCCH	28.7	2.2e-09	321	345	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+++ +G CkyG++CkF H+ XP_022149754.1 321 GQAVCSYYGMYGLCKYGPSCKFDHP 345 7899********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MPDNLQVQRN AVPNQSPDIS EALWRLEIGD NQDGGDAEES SPYPDRPGEP DCLYYMRTGS 60 CSYGSNCRFN HPVYVAQGAL YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA 120 GPVTFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSSVGNMLPQ ARPGALGSAG 180 TPFMPSSGLP YSGGIPAWSL PRVQYMPGPC VQGQQSYVPV LVSPSQGAIA AQDWNTYMGN 240 VSPVLPNLGY GSVNLDDSYS NGHLALSTST PALPDRPDQP ECRYFMNNGT CKYGSDCKFH 300 HPKQRIAQSA TNALGLPSRP GQAVCSYYGM YGLCKYGPSC KFDHPSATYP YNYGFTLPVL 360 DSSFLKYPSN NLSISSHETS AQTLSKSSEW VQKADASNNK RRTTDAKVVD NTAEEATSVS 420 SSLPPGGSES LQDQSG

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MPDNLQVQRN AVPNQSPDIS EALWRLEIGD NQDGGDAEES SPYPDRPGEP DCLYYMRTGS  60
CSYGSNCRFN HPVYVAQGAL YNGELPERIG QPDCEYFLKT GTCKYGGSCK YHHPRDRRGA  120
GPVTFNILGL PMRQEEKSCP YYLRTGSCKF GVSCKFNHPQ PSSVGNMLPQ ARPGALGSAG  180
TPFMPSSGLP YSGGIPAWSL PRVQYMPGPC VQGQQSYVPV LVSPSQGAIA AQDWNTYMGN  240
VSPVLPNLGY GSVNLDDSYS NGHLALSTST PALPDRPDQP ECRYFMNNGT CKYGSDCKFH  300
HPKQRIAQSA TNALGLPSRP GQAVCSYYGM YGLCKYGPSC KFDHPSATYP YNYGFTLPVL  360
DSSFLKYPSN NLSISSHETS AQTLSKSSEW VQKADASNNK RRTTDAKVVD NTAEEATSVS  420
SSLPPGGSES LQDQSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-111	C3H family protein