PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022149323.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

HB-PHD

Protein Properties

Length: 876aa MW: 96717 Da PI: 4.8354

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022149323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	42.4	1.2e-13	693	743	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ le+L + F++n+yp+++++e LA++lgL+ +qV+ WF N R + XP_022149323.1 693 RLSQPALERLLASFQENQYPKRATKESLAQELGLSLKQVSKWFENTRWSTR 743 678999*****************************************8766 PP
2	PHD	37.6	5.1e-13	339	394	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ e++++lCdg C++ fH+ Cl+++l ++++p + wlC+ C++k XP_022149323.1 339 FCAKCGSkeLSLENDIILCDGiCDRGFHQFCLEPPLLNTDIPPDdeGWLCPGCDCK 394 6999965556****88***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence
MEERHEYTEP RPNNNCEAVQ EAKASVEVLT CFSNEQMHSI PDNQELGTTP ECTSKTAGPD 60 DEKSGVQQNM EEETKELGSG DVLSELPEKN NQTISKLAEI DQVEAGNLLS SDIETENLIL 120 PIELETTTLN ECSELPPEDA NKNSIKQVNP PIEDLTQNTS IQRLETVPIT SVSISQQLGH 180 KDKKILKSKK KNYMLRSLVS SDRVLRSRTQ EKAKAPEPSN ELNKLTAGEG KRKKKKRNIK 240 GKGASGDEFS SIRNRLRYLV NRIKYEQSLI DAYSSEGWKG FSSDKLKPEK ELQRASSEIM 300 RGKLKIRDLF QHLDSLCAEG RLSESLFDSE GQIDSEDIFC AKCGSKELSL ENDIILCDGI 360 CDRGFHQFCL EPPLLNTDIP PDDEGWLCPG CDCKDDCLDL LNEFQGSNLS ITDGWEKVYP 420 EAAAAAAGQN SDHALGLPSD DSEDGDYDPD APDTINQEDE SSSDQSSSDE SGYASASEEL 480 EAAPNDDQYL GLPSDDSEDD DYEPGAPELD EGVKQESSGS DFTSDSEDLA ALDDGTTPVR 540 NSNGQGSGCG PRTSVLHNEL QSLLESGPDK DGLEPVSGRR QVERLDYKKL HDETYGNVPS 600 DSSDDTFGSI SIDSSDDRGR GSRTRKRSPK NLVPALNGTN DDLKNKKTKR SYKRRTHQKP 660 GAENMKNSVT RTPEDSVKSS SSVRRTASSS NRRLSQPALE RLLASFQENQ YPKRATKESL 720 AQELGLSLKQ VSKWFENTRW STRHPSSIES NKAKSALRMG IQSSETSGKL PKPEQESGAC 780 FRDTDNNGAQ HQVSPNTDGA VAPCQSGDTR DDKLATQKTT RPESTATKSR KRKGRSDHVA 840 SHSKDRKESQ KPPAKSPKVN QIQTADKVRT RRRRSI

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence

MEERHEYTEP RPNNNCEAVQ EAKASVEVLT CFSNEQMHSI PDNQELGTTP ECTSKTAGPD  60
DEKSGVQQNM EEETKELGSG DVLSELPEKN NQTISKLAEI DQVEAGNLLS SDIETENLIL  120
PIELETTTLN ECSELPPEDA NKNSIKQVNP PIEDLTQNTS IQRLETVPIT SVSISQQLGH  180
KDKKILKSKK KNYMLRSLVS SDRVLRSRTQ EKAKAPEPSN ELNKLTAGEG KRKKKKRNIK  240
GKGASGDEFS SIRNRLRYLV NRIKYEQSLI DAYSSEGWKG FSSDKLKPEK ELQRASSEIM  300
RGKLKIRDLF QHLDSLCAEG RLSESLFDSE GQIDSEDIFC AKCGSKELSL ENDIILCDGI  360
CDRGFHQFCL EPPLLNTDIP PDDEGWLCPG CDCKDDCLDL LNEFQGSNLS ITDGWEKVYP  420
EAAAAAAGQN SDHALGLPSD DSEDGDYDPD APDTINQEDE SSSDQSSSDE SGYASASEEL  480
EAAPNDDQYL GLPSDDSEDD DYEPGAPELD EGVKQESSGS DFTSDSEDLA ALDDGTTPVR  540
NSNGQGSGCG PRTSVLHNEL QSLLESGPDK DGLEPVSGRR QVERLDYKKL HDETYGNVPS  600
DSSDDTFGSI SIDSSDDRGR GSRTRKRSPK NLVPALNGTN DDLKNKKTKR SYKRRTHQKP  660
GAENMKNSVT RTPEDSVKSS SSVRRTASSS NRRLSQPALE RLLASFQENQ YPKRATKESL  720
AQELGLSLKQ VSKWFENTRW STRHPSSIES NKAKSALRMG IQSSETSGKL PKPEQESGAC  780
FRDTDNNGAQ HQVSPNTDGA VAPCQSGDTR DDKLATQKTT RPESTATKSR KRKGRSDHVA  840
SHSKDRKESQ KPPAKSPKVN QIQTADKVRT RRRRSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	237	KRKKKKR
2	232	237	RKKKKR
3	653	657	KRRTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	3e-77	HB-PHD family protein