PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022148385.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 709aa MW: 76965.5 Da PI: 6.6041

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022148385.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.2	5e-07	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg XP_022148385.1 278 PCPEFRK-GTCRQGDACEYAHG 298 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MCHGCNRKSA SSSFVMDSGL KHEGLGYNFS LLLELSAKDD LIGFKKAVEE DGHDIDESSL 60 WYGRIFGSKK MGYEERTPLI VAAMFGSMNV LSYILRSGRV DVNRACGSDG ATALHCAVAG 120 GSAILDQVAK VLLDASADVN AVDANGNRPG DLIAPAHTLA FYSRKKALQQ LLNGADESEE 180 TLGSSNKIFY ERGVEEPWEV STARVSRDGT EKKEYPVDLS LPDIKNGIYS TDEFRMYTFK 240 IKPCTRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGTCRQG DACEYAHGIF 300 ECWLHPAQYR TRLCKDETGC TRKVCFFAHK PEELRPLYAS TGSAVVSPRS ICGSSLDIAS 360 ISSLTLGSPS AVIPPSSTPP MTPSGVSSPM GGTLWQTQCN IAPPTLQLPG SRLKAAWSAR 420 DIDLDVELLG LENQRRRQQQ LMDELSCLPS PSRWNSGLST PASFPSPRSR NGEMNGLGGV 480 NPTNLEDIFG SVDPATLSQL QGLSLDSVAS QVQSPSGIQM RQNMNQSFLS RYANSIASPP 540 ARASQPFGVD MSVSAATSVL SSRAAAFAKR SQSFIERGAV NRHSGLSVSP PATSATAMPL 600 NNLSDWGSPD GKLDWGIHGE ELHKLRKSAS IGLRGSCSSS LAITSAMHAA PAEPDVSWVQ 660 SLVKDAPTKN AMRSSTDEQQ QLYHLNNGDS ETVPTWVEQM YLEQEQLVA

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MCHGCNRKSA SSSFVMDSGL KHEGLGYNFS LLLELSAKDD LIGFKKAVEE DGHDIDESSL  60
WYGRIFGSKK MGYEERTPLI VAAMFGSMNV LSYILRSGRV DVNRACGSDG ATALHCAVAG  120
GSAILDQVAK VLLDASADVN AVDANGNRPG DLIAPAHTLA FYSRKKALQQ LLNGADESEE  180
TLGSSNKIFY ERGVEEPWEV STARVSRDGT EKKEYPVDLS LPDIKNGIYS TDEFRMYTFK  240
IKPCTRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGTCRQG DACEYAHGIF  300
ECWLHPAQYR TRLCKDETGC TRKVCFFAHK PEELRPLYAS TGSAVVSPRS ICGSSLDIAS  360
ISSLTLGSPS AVIPPSSTPP MTPSGVSSPM GGTLWQTQCN IAPPTLQLPG SRLKAAWSAR  420
DIDLDVELLG LENQRRRQQQ LMDELSCLPS PSRWNSGLST PASFPSPRSR NGEMNGLGGV  480
NPTNLEDIFG SVDPATLSQL QGLSLDSVAS QVQSPSGIQM RQNMNQSFLS RYANSIASPP  540
ARASQPFGVD MSVSAATSVL SSRAAAFAKR SQSFIERGAV NRHSGLSVSP PATSATAMPL  600
NNLSDWGSPD GKLDWGIHGE ELHKLRKSAS IGLRGSCSSS LAITSAMHAA PAEPDVSWVQ  660
SLVKDAPTKN AMRSSTDEQQ QLYHLNNGDS ETVPTWVEQM YLEQEQLVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein