PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022147903.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 352aa MW: 38939.5 Da PI: 8.0698

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022147903.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.2e-08	2	17	11	26
GTS--TTTTT-SS-SS CS zf-CCCH 11 rtGtCkyGdrCkFaHg 26 t tCk+Gd+CkF H+ XP_022147903.1 2 LTRTCKFGDSCKFDHP 17 689************8 PP
2	zf-CCCH	36.5	8.4e-12	44	70	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G+rCkF+H++ XP_022147903.1 44 PGEPDCPYFLKTQRCKFGSRCKFNHPK 70 5789*********************96 PP
3	zf-CCCH	35.9	1.3e-11	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+ +tG Ck+G +CkF+H++ XP_022147903.1 92 EPLCAFYVKTGKCKFGVNCKFHHPK 116 79*********************96 PP
4	zf-CCCH	37.7	3.4e-12	171	194	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ XP_022147903.1 171 EVDCPFYLKTGSCKYGTSCRYNHP 194 689********************9 PP
5	zf-CCCH	41.6	2e-13	254	277	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG Ck+G+rCkF+H+ XP_022147903.1 254 QIECDYYMKTGDCKFGERCKFHHP 277 568********************8 PP
6	zf-CCCH	35.6	1.6e-11	306	328	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++t tCkyG++CkF H+p XP_022147903.1 306 ICPYYLKTATCKYGSTCKFDHPP 328 6********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MLTRTCKFGD SCKFDHPIWV PEGGIPDWKE VPQIANNEDL PERPGEPDCP YFLKTQRCKF 60 GSRCKFNHPK DRSDSVGAEK SDVSALPERP SEPLCAFYVK TGKCKFGVNC KFHHPKDILV 120 LSGAENGNSE QTLMEAKIEG GIGDFKLVKP PVSFPPALIH NSKGLPIRLG EVDCPFYLKT 180 GSCKYGTSCR YNHPDRNAIN SCNATMVHPA MVSASNMNIG LVNPSNAIYQ AINPRLIQPP 240 LGSSSSIYPQ RPGQIECDYY MKTGDCKFGE RCKFHHPIDR SAPKQAAQQN VKLTLAGLPR 300 REDAIICPYY LKTATCKYGS TCKFDHPPPG EVVAMAAIQT VQGKEGEERI DE

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MLTRTCKFGD SCKFDHPIWV PEGGIPDWKE VPQIANNEDL PERPGEPDCP YFLKTQRCKF  60
GSRCKFNHPK DRSDSVGAEK SDVSALPERP SEPLCAFYVK TGKCKFGVNC KFHHPKDILV  120
LSGAENGNSE QTLMEAKIEG GIGDFKLVKP PVSFPPALIH NSKGLPIRLG EVDCPFYLKT  180
GSCKYGTSCR YNHPDRNAIN SCNATMVHPA MVSASNMNIG LVNPSNAIYQ AINPRLIQPP  240
LGSSSSIYPQ RPGQIECDYY MKTGDCKFGE RCKFHHPIDR SAPKQAAQQN VKLTLAGLPR  300
REDAIICPYY LKTATCKYGS TCKFDHPPPG EVVAMAAIQT VQGKEGEERI DE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-155	C3H family protein