PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022147902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Family | C3H | ||||||||
Protein Properties | Length: 437aa MW: 48305.9 Da PI: 8.1386 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.7 | 6.1e-11 | 96 | 120 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_022147902.1 96 GEKDCAHYMLTRTCKFGDSCKFDHP 120 7889********************8 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 147 | 173 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G+rCkF+H++ XP_022147902.1 147 PGEPDCPYFLKTQRCKFGSRCKFNHPK 173 5789*********************96 PP | |||||||
3 | zf-CCCH | 35.5 | 1.7e-11 | 195 | 219 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+ +tG Ck+G +CkF+H++ XP_022147902.1 195 EPLCAFYVKTGKCKFGVNCKFHHPK 219 79*********************96 PP | |||||||
4 | zf-CCCH | 37.4 | 4.4e-12 | 274 | 297 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ XP_022147902.1 274 EVDCPFYLKTGSCKYGTSCRYNHP 297 689********************9 PP | |||||||
5 | zf-CCCH | 34.6 | 3.3e-11 | 344 | 362 | 8 | 26 |
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 ++++tG Ck+G+rCkF+H+ XP_022147902.1 344 YYMKTGDCKFGERCKFHHP 362 9*****************8 PP | |||||||
6 | zf-CCCH | 35.2 | 2e-11 | 391 | 413 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++t tCkyG++CkF H+p XP_022147902.1 391 ICPYYLKTATCKYGSTCKFDHPP 413 6********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence |
MYSTQKEALR LSAADIVPRT SHLVSQYSWS GTDVAAALDS VVSGVKRSSD VLYDQTVLGS 60 CNTLGQSEAW YTSNSLAKRP RFESTSNLPV YPQRPGEKDC AHYMLTRTCK FGDSCKFDHP 120 IWVPEGGIPD WKEVPQIANN EDLPERPGEP DCPYFLKTQR CKFGSRCKFN HPKDRSDSVG 180 AEKSDVSALP ERPSEPLCAF YVKTGKCKFG VNCKFHHPKD ILVLSGAENG NSEQTLMEAK 240 IEGGIGDFKL VKPPVSFPPA LIHNSKGLPI RLGEVDCPFY LKTGSCKYGT SCRYNHPDRN 300 AINSCNATMV HPAMVSASNM NIGLVNPSNA IYQAINPRLI QPPYYMKTGD CKFGERCKFH 360 HPIDRSAPKQ AAQQNVKLTL AGLPRREDAI ICPYYLKTAT CKYGSTCKFD HPPPGEVVAM 420 AAIQTVQGKE GEERIDE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-176 | C3H family protein |