PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022147803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25164.3 Da PI: 7.2194 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126 | 1.8e-39 | 29 | 130 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v+++l+lqqq+++l+ael XP_022147803.1 29 PCGACKFLRRKCVNGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVTRRHDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAEL 123 7***********************9989******************************************************************* PP DUF260 95 allkeel 101 a+++++l XP_022147803.1 124 AAVQTQL 130 **99885 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MADAGELVVL APRRKRGGNR QEQPDSVAPC GACKFLRRKC VNGCIFAPHF GSDQGAARFA 60 AVHKVFGASN VSKLLLHIPV TRRHDAVVTI SYEAQARLSD PVYGCVSTVL ALQQQVASLQ 120 AELAAVQTQL INSRLAFATA IQNSQPPQVG VLQPAYSNNS SVSVSASAST SAHNAINLSS 180 FTSNYDLPTE TAPSSHQLEP LHLPHRSIEE EEDEENSQLP TIFTVPDELL RRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-56 | LBD family protein |