PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022146821.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 26757.3 Da PI: 8.4717 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.6 | 6.9e-41 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++C+++pyf ++p+kfa vhk+FGasnv+k+l ++ e++r da++slvyeA++r+rdPvyG++g i++lq+q++ l++el+ XP_022146821.1 52 PCAACKLLRRRCVQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVAENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQVELN 146 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_022146821.1 147 AVRAE 151 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MSKERERFDE IAKKIKRETD VSSSSNNLPH QIMGRRQTTL QSPPGTLNTI TPCAACKLLR 60 RRCVQECPFS PYFSPHEPHK FASVHKVFGA SNVSKMLMEV AENQRADAAN SLVYEANVRL 120 RDPVYGCMGA ISALQHQIQA LQVELNAVRA EILRYKYREA NIIHSSPQHV PFLSSSAEVV 180 SIAVPPPPPL LPPPPHYDGS ASSSSSLYNR PAVAVAADYS TISSDENVPY FVRTSTTHQL 240 DS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 8e-85 | LBD family protein |