PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022145337.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

LSD

Protein Properties

Length: 121aa MW: 12926.4 Da PI: 8.407

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022145337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.1	5.1e-12	15	39	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC++lL YP GA+s++C+lC+ V XP_022145337.1 15 CSGCKNLLIYPVGATSICCTLCHSV 39 ***********************98 PP
2	zf-LSD1	34.9	2.5e-11	54	78	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC+tlL + rGA+sV+C++C tV XP_022145337.1 54 CKGCHTLLLFSRGATSVQCSCCRTV 78 ************************9 PP
3	zf-LSD1	33.5	7e-11	92	116	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +Cr lL+Y GA sVRC+lC++V XP_022145337.1 92 CRNCRMLLMYQCGAHSVRCTLCNFV 116 99*********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence
MPIPPVTCCQ SRMVCSGCKN LLIYPVGATS ICCTLCHSVS PVPTPGLEMA RLVCKGCHTL 60 LLFSRGATSV QCSCCRTVNS ASKANQTAEI NCRNCRMLLM YQCGAHSVRC TLCNFVTLVG 120 S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	6e-54	LSD family protein