PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022144141.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 378aa MW: 40265.5 Da PI: 8.9064

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022144141.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	1e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022144141.1 70 FVCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	16.2	2.9e-05	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ XP_022144141.1 146 WKCERCSKKYAVQSDWKAHMKTC 168 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MVAAENNSSP AALSTPSGDE AAVSSSPGVQ IEIVGAVAPP KKKRNLPGMP DPDAEVIALS 60 PKSLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTSQEIRKRV YVCPEASCVH 120 HNPARALGDL TGIKKHFSRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTL 180 FSRRDSFITH RAFCDALAEE SGRSQPRTRL SFVSSDSNAL AAAASAAAVA SSPPPPPLTP 240 LATVLSPALS IQSSEQPDNP IGPPPLTPAV TSITSATSNV TDPINGGGIG GRTSIFAGVF 300 ASSPAVISNA DPNPPQPITS GSHPDWVDNP PSTATAITIV EPTSLTLSTS LFLSCRSSGS 360 SIFQDHPTHY LPSPQLQP

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MVAAENNSSP AALSTPSGDE AAVSSSPGVQ IEIVGAVAPP KKKRNLPGMP DPDAEVIALS  60
PKSLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTSQEIRKRV YVCPEASCVH  120
HNPARALGDL TGIKKHFSRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTL  180
FSRRDSFITH RAFCDALAEE SGRSQPRTRL SFVSSDSNAL AAAASAAAVA SSPPPPPLTP  240
LATVLSPALS IQSSEQPDNP IGPPPLTPAV TSITSATSNV TDPINGGGIG GRTSIFAGVF  300
ASSPAVISNA DPNPPQPITS GSHPDWVDNP PSTATAITIV EPTSLTLSTS LFLSCRSSGS  360
SIFQDHPTHY LPSPQLQP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-115	C2H2 family protein