PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022143403.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family M-type_MADS
Protein Properties Length: 350aa    MW: 39654.1 Da    PI: 4.5262
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022143403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.45.6e-161050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i+++  r+ tf kR + ++KKA+ELS+LCd++ +v+i ++
  XP_022143403.1 10 LISSHKSRTATFRKRTKSLMKKAFELSTLCDVRTCVLIHGP 50
                    6999**********************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MGRGKLSLKL ISSHKSRTAT FRKRTKSLMK KAFELSTLCD VRTCVLIHGP APPQDGDRSV  60
VESHTWPPNR EEIEGIIRAY KTNYLRKPSM KSFGLYDFFS GRMKKIEKER AKFSEEIKYA  120
GWDERLNCLS EQQLRLFMDN LGSKIEAAEG MIGFMEGVSA IDSAGVSTEL FEEKTPTSED  180
SVIVDPQRLP RYEFQAEEAD YDHLIGDGAL ATDLIGGLTE NQTPNSENST FEGASAIDFA  240
GRSTENQTPN SENSTIDSQW FPFHDGLQTE EALLMIPDHD FNLLFDPNRV XYTCEDLLSN  300
NDMRLQSVLP LSYLPCGSDY SQMMNNASNQ VQDYPVDYSD FEYRMMTSNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-16M-type_MADS family protein