PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022143091.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 345aa MW: 38073.7 Da PI: 8.0506

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022143091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.9	8.6e-09	90	114	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f + G C+ G++C+FaHg XP_022143091.1 90 FKTRMCAKFKA-GLCRNGANCNFAHG 114 69*******.***********9 PP
2	zf-CCCH	30.9	4.8e-10	149	173	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +k++lCr f+ + +C+yGdrC+F H XP_022143091.1 149 QKMKLCRKFYNGEECPYGDRCNFLH 173 5999*****66********** PP
3	zf-CCCH	41	3.3e-13	236	262	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ XP_022143091.1 236 WKTKLCTKWEITGHCPFGEKCHFAHGQ 262 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MSFNDLRASV MPLPLHSYGA ANGDASGCWP QFPRNDLFDP QSQFEPQPPP FKRARNSEEN 60 QSDPMPYPPS NSRVHPPNAP VNKGVSNIFF KTRMCAKFKA GLCRNGANCN FAHGVEDMRQ 120 PPPNWQEIVG LREDDQSVSN WNDDQKIIQK MKLCRKFYNG EECPYGDRCN FLHEDPAKFR 180 DDSGRFRESS AISIGTTGTP LMNGSDSAYP EASRAASSSV SDTLRATNVN VRPSFWKTKL 240 CTKWEITGHC PFGEKCHFAH GQSELQLSVG RDGEASNSAL NIKPLVVAAE APSSSAMSAP 300 SSAVPEGQGK RCLLKWKGPK KINRIYADWL DDLPLSPSSA SKMEG

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MSFNDLRASV MPLPLHSYGA ANGDASGCWP QFPRNDLFDP QSQFEPQPPP FKRARNSEEN  60
QSDPMPYPPS NSRVHPPNAP VNKGVSNIFF KTRMCAKFKA GLCRNGANCN FAHGVEDMRQ  120
PPPNWQEIVG LREDDQSVSN WNDDQKIIQK MKLCRKFYNG EECPYGDRCN FLHEDPAKFR  180
DDSGRFRESS AISIGTTGTP LMNGSDSAYP EASRAASSSV SDTLRATNVN VRPSFWKTKL  240
CTKWEITGHC PFGEKCHFAH GQSELQLSVG RDGEASNSAL NIKPLVVAAE APSSSAMSAP  300
SSAVPEGQGK RCLLKWKGPK KINRIYADWL DDLPLSPSSA SKMEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	5e-91	C3H family protein