PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022142188.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

ARF

Protein Properties

Length: 728aa MW: 79404.1 Da PI: 7.4199

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022142188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.7	2.6e-24	150	251	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_022142188.1 150 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyN-QQRPSQELVATDLLGQKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 241 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_022142188.1 242 GELRLGIRRA 251 999**996 PP
2	Auxin_resp	115.8	3.9e-38	276	357	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+stks F+v+YnPras+s+Fv +++k++k++++++svGmRf+++feted++ rr++G+++gv d+dp+rWp+S+WrsL XP_022142188.1 276 VVNAISTKSSFSVYYNPRASSSQFVLPLHKFLKSINHPFSVGMRFRLSFETEDAADRRYTGLISGVGDVDPIRWPGSRWRSL 357 689*****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence
MGALIDLNTT EEDEAPSSAA SSASSSSASA FTSSPSPSVA SSICLELWHA CAGPLTSLPK 60 KGSLVLYLPQ GHLEMLEFPP TACDLPPHIL CRVIDVQLHQ AEAGSDEVYA QVSLFPENEQ 120 IENRMQEEMN NDSEEEDVEG GEKTTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD 180 YNQQRPSQEL VATDLLGQKW KFRHIYRGQP RRHLLTTGWS AFVNKKRLVS GDAVLFLRGN 240 DGELRLGIRR AAQLKSGSAF PNICSQHVSS SSIMEVVNAI STKSSFSVYY NPRASSSQFV 300 LPLHKFLKSI NHPFSVGMRF RLSFETEDAA DRRYTGLISG VGDVDPIRWP GSRWRSLVVR 360 WDDVESNRHG RVSPWEIEPS GSASTPSNLV PPGLKRTRIG LSSTKLEFPV PNGIGTSDFG 420 ESLRFQKVLQ GQEILGYNTP PIDGDNITRH PPEKRRLFPG LHGSGIAMMR NGPRNPFINS 480 ETSSRGIVFD ESFQFHKVLQ GQEIFPSPFY GRAMATNEVK ASGGCGAIEG IRLSRSKDGW 540 PPMAMQCENF LGRSSIPSVQ VSSPSSVFMF QQSMVPVQSF NTHNRGDFAE QRITNKSTSL 600 SGTAFTTDHS SNTEVPQGMH PTSLGEQNQL GLSHLSTTAS VFSGCKDLSS TCKAGCRLFG 660 FSLTEEKNAG NADKASPATS AVNAGTTTVL SNIGVQCPRK SPLMSKVVGS NCTKGAFQYH 720 FANYSTYY

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence

MGALIDLNTT EEDEAPSSAA SSASSSSASA FTSSPSPSVA SSICLELWHA CAGPLTSLPK  60
KGSLVLYLPQ GHLEMLEFPP TACDLPPHIL CRVIDVQLHQ AEAGSDEVYA QVSLFPENEQ  120
IENRMQEEMN NDSEEEDVEG GEKTTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD  180
YNQQRPSQEL VATDLLGQKW KFRHIYRGQP RRHLLTTGWS AFVNKKRLVS GDAVLFLRGN  240
DGELRLGIRR AAQLKSGSAF PNICSQHVSS SSIMEVVNAI STKSSFSVYY NPRASSSQFV  300
LPLHKFLKSI NHPFSVGMRF RLSFETEDAA DRRYTGLISG VGDVDPIRWP GSRWRSLVVR  360
WDDVESNRHG RVSPWEIEPS GSASTPSNLV PPGLKRTRIG LSSTKLEFPV PNGIGTSDFG  420
ESLRFQKVLQ GQEILGYNTP PIDGDNITRH PPEKRRLFPG LHGSGIAMMR NGPRNPFINS  480
ETSSRGIVFD ESFQFHKVLQ GQEIFPSPFY GRAMATNEVK ASGGCGAIEG IRLSRSKDGW  540
PPMAMQCENF LGRSSIPSVQ VSSPSSVFMF QQSMVPVQSF NTHNRGDFAE QRITNKSTSL  600
SGTAFTTDHS SNTEVPQGMH PTSLGEQNQL GLSHLSTTAS VFSGCKDLSS TCKAGCRLFG  660
FSLTEEKNAG NADKASPATS AVNAGTTTVL SNIGVQCPRK SPLMSKVVGS NCTKGAFQYH  720
FANYSTYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein