PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022142120.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C3H

Protein Properties

Length: 740aa MW: 81479 Da PI: 7.3494

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022142120.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.2	4.3e-06	190	212	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C+f+a+ G+C G++C F H XP_022142120.1 190 VAICDFYAK-GWCIKGSSCGFLHL 212 589****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence
MDTKSHDKHL RSDTVVPEKS EVNKLSTVGE SSGNLELFSL SGKPLAKLEE QSLGECTKVE 60 SRKCLKDKET EDKKYTVDDK DVEALRNNLP NDFGGSNYDN KVPFYNSEIM DAKATNGSSV 120 TVKECDIGLK NHSIGGSIST MNPERESKQT DMQLENGENQ MASRSAASKK RTRSLSPSAG 180 VNIEDKHPAV AICDFYAKGW CIKGSSCGFL HLKDKFDGSD EHSEEHTGGE YLKKQAQLNE 240 GLQCSTDMLK SPVFHHPPDS SFLKQSSFSL KFGLSSERTL QSDFTERQGW DGLHETNKFL 300 LNQREDSLLS TLPDCHKLPS TSFGPSYPLS RGVSTSRNGL PPTFGLSSGS FMKLGVMEEP 360 ANVACPRLQN DHLSPVSRTL NLNTTLPTIG SLSSRSTTSN TSSFSFTSST SASLLGAQKM 420 SIIDREPRVF TTASSLMRSS SSFSPSESDN SLTNAPMNSS EYKGKYSSND WEPSIPFRPS 480 FFIPSINTAS QYDPFLDSIE VPRIVGGSYS VPLNRQGHEE VLTLCTLRKA SGNFMVPGSS 540 KPEFNDDASS LSSRNKAEDK NDKNCYVHGK DSLLLEAEMQ GSSGVDGCNG SRISEAGHVG 600 LTREKYVTKT KKKDTDSELR LPNILLHEKD SEADSDRQLG DMDGKHLMDG NVHKESKATR 660 HFRSALIELV KEILKPKWRE GHLKKDVHNT VVKKTLHKVL GTLQSHQVPT TVESVKLYLS 720 SSRPKIEKLV EGYVSKYGKS

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence

MDTKSHDKHL RSDTVVPEKS EVNKLSTVGE SSGNLELFSL SGKPLAKLEE QSLGECTKVE  60
SRKCLKDKET EDKKYTVDDK DVEALRNNLP NDFGGSNYDN KVPFYNSEIM DAKATNGSSV  120
TVKECDIGLK NHSIGGSIST MNPERESKQT DMQLENGENQ MASRSAASKK RTRSLSPSAG  180
VNIEDKHPAV AICDFYAKGW CIKGSSCGFL HLKDKFDGSD EHSEEHTGGE YLKKQAQLNE  240
GLQCSTDMLK SPVFHHPPDS SFLKQSSFSL KFGLSSERTL QSDFTERQGW DGLHETNKFL  300
LNQREDSLLS TLPDCHKLPS TSFGPSYPLS RGVSTSRNGL PPTFGLSSGS FMKLGVMEEP  360
ANVACPRLQN DHLSPVSRTL NLNTTLPTIG SLSSRSTTSN TSSFSFTSST SASLLGAQKM  420
SIIDREPRVF TTASSLMRSS SSFSPSESDN SLTNAPMNSS EYKGKYSSND WEPSIPFRPS  480
FFIPSINTAS QYDPFLDSIE VPRIVGGSYS VPLNRQGHEE VLTLCTLRKA SGNFMVPGSS  540
KPEFNDDASS LSSRNKAEDK NDKNCYVHGK DSLLLEAEMQ GSSGVDGCNG SRISEAGHVG  600
LTREKYVTKT KKKDTDSELR LPNILLHEKD SEADSDRQLG DMDGKHLMDG NVHKESKATR  660
HFRSALIELV KEILKPKWRE GHLKKDVHNT VVKKTLHKVL GTLQSHQVPT TVESVKLYLS  720
SSRPKIEKLV EGYVSKYGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-25	C3H family protein