PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022140571.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family GRAS
Protein Properties Length: 545aa    MW: 60789.9 Da    PI: 6.666
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022140571.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.69.8e-1381765452374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+ cA+avs++d+ +aq+l+ +l++++s +g+p+qRl ay++e+L arla+s+s +ykal+++e +   s+e l+++++++ev+P++kf+++
  XP_022140571.1 176 KKILIVCAKAVSDNDALMAQWLMDELRKMVSVRGEPIQRLGAYMLEGLVARLASSGSCIYKALRCKEPA---SAELLSYMHVLYEVCPYFKFGYM 267
                     789*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ e+rvHiiDf+isqG+QW++L+qa+a Rp+gpp++RiTg+++p+s   +   l  +g+rL+++A++++vpfef+  +a +  ++
  XP_022140571.1 268 SANGAIAEAMKDEDRVHIIDFQISQGTQWITLIQAFAGRPGGPPHIRITGIDDPASAyaRGGGLDIVGKRLSRLAKSCNVPFEFHS-AALSGCNV 361
                     *******************************************************9999999************************.8999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L +++gEalaVn++++lh+++desvs+e++rd++L++vk+lsP+vv++veqe+++n++ F+ rf+e+l+yy a+f+s++++lpr+++eri+
  XP_022140571.1 362 QLKNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRMVKGLSPRVVTLVEQESNTNTAAFFPRFIETLDYYNAMFESIDVTLPRQHKERIN 456
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+++l+re+vn++acegaer+erhe l+kWr r+ +aGF+p+pls+ +++++k+ll  + ++ yr+ee++g+l+lgW++r Lv+ +aW+
  XP_022140571.1 457 IEQHCLAREVVNILACEGAERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDSYCKR-YRLEEREGALYLGWMNRDLVASCAWK 545
                     *************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MQASQLHRGS HMSKRLCYQP LQGVDAYCFS QFQTLGRQLY STGGNQRGEF NVQDIGDRYC  60
TLESSSGSHC YTAHNSTSTI TFSPNGSPVS QQDSRSNPSD QNNSPDNTYG SPVSGSSITD  120
DISDFTHKLR ELESVMLGPD SDVIDSFDSI YQEGTDNPEM GSWGQVMDAI TKGNLKKILI  180
VCAKAVSDND ALMAQWLMDE LRKMVSVRGE PIQRLGAYML EGLVARLASS GSCIYKALRC  240
KEPASAELLS YMHVLYEVCP YFKFGYMSAN GAIAEAMKDE DRVHIIDFQI SQGTQWITLI  300
QAFAGRPGGP PHIRITGIDD PASAYARGGG LDIVGKRLSR LAKSCNVPFE FHSAALSGCN  360
VQLKNLGIRR GEALAVNFAF MLHHMPDESV STENHRDRLL RMVKGLSPRV VTLVEQESNT  420
NTAAFFPRFI ETLDYYNAMF ESIDVTLPRQ HKERINIEQH CLAREVVNIL ACEGAERVER  480
HELLGKWRLR FAMAGFTPYP LSSLVNATIK TLLDSYCKRY RLEEREGALY LGWMNRDLVA  540
SCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein