PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022140562.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

CO-like

Protein Properties

Length: 422aa MW: 46108.4 Da PI: 4.9285

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022140562.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.7	3.6e-06	9	49	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ XP_022140562.1 9 MCDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 49 7*****************************65677777766 PP
2	zf-B_box	19	3e-06	51	95	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41 C++++ +++ C++ + lC++C + H g H++++ XP_022140562.1 51 LLCERCHLQPAAVRCTEERISLCQNCDWTVH-GtstsasssHKRQT 95 57*************************99.54778888888765 PP
3	CCT	56.9	7.6e-20	365	408	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a+lRYkeK+k RkFeK++rY++RKa+A+ R RvKGrFvk+ XP_022140562.1 365 RNNAVLRYKEKKKARKFEKRVRYATRKARADVRRRVKGRFVKAG 408 99***************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MSIVNMGFMC DFCGDQRSMV YCRSDAACLC LSCDRNVHSA NALSRRHSRT LLCERCHLQP 60 AAVRCTEERI SLCQNCDWTV HGTSTSASSS HKRQTINCYS GCPSAAELSS IWSFVLDVPS 120 VNDACEQELG LMSIAETDLT GAWSPSENNA SQRMPGSAKS SDVCSREKSN VWVGSSSLTD 180 FGSKLHTSDQ PDELANVALP KFCCPGTKVA GLCSEDDDIY KEFDMDEMDL SLENYEELFG 240 VGSNNPEELF ENCGIDNLFE AKDVSFEDSI CHGSVAAEGS SVGVVKPMQP AYSNGASADS 300 IMSTKTEPIL CFNTRQAQSG LSFSGLTGES SAGDYQDCGA SSMLLMGEPP WCAPGTESSF 360 PSSDRNNAVL RYKEKKKARK FEKRVRYATR KARADVRRRV KGRFVKAGEA YDYDPLNQTR 420 SC

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MSIVNMGFMC DFCGDQRSMV YCRSDAACLC LSCDRNVHSA NALSRRHSRT LLCERCHLQP  60
AAVRCTEERI SLCQNCDWTV HGTSTSASSS HKRQTINCYS GCPSAAELSS IWSFVLDVPS  120
VNDACEQELG LMSIAETDLT GAWSPSENNA SQRMPGSAKS SDVCSREKSN VWVGSSSLTD  180
FGSKLHTSDQ PDELANVALP KFCCPGTKVA GLCSEDDDIY KEFDMDEMDL SLENYEELFG  240
VGSNNPEELF ENCGIDNLFE AKDVSFEDSI CHGSVAAEGS SVGVVKPMQP AYSNGASADS  300
IMSTKTEPIL CFNTRQAQSG LSFSGLTGES SAGDYQDCGA SSMLLMGEPP WCAPGTESSF  360
PSSDRNNAVL RYKEKKKARK FEKRVRYATR KARADVRRRV KGRFVKAGEA YDYDPLNQTR  420
SC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-121	CO-like family protein