PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022140362.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 457aa MW: 49998 Da PI: 8.5271

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022140362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.2e-06	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F r nL+ H r H XP_022140362.1 57 FVCEICGKGFQRDQNLQLHRRGH 79 89*******************88 PP
2	zf-C2H2	12.8	0.00036	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k++ +s+ k H +t+ XP_022140362.1 133 WRCDKCSKRYAVQSDWKAHSKTC 155 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MMEKMDDEEF SNCFLQIPAA GSNPSLAKKK RNLPGNPDPE AEVVALSPKT LMATNRFVCE 60 ICGKGFQRDQ NLQLHRRGHN LPWKLKQRSS KEPRKRVYVC PEKSCVHHHP SRALGDLTGI 120 KKHFCRKHGE KKWRCDKCSK RYAVQSDWKA HSKTCGTREY KCDCGTLFSR RDSFITHRAF 180 CDALAEETAR VNYAATSISN AANNNFNYQF MGGGTESALF MPQPQHYFPA ASIFKPIISG 240 NEGRTSLRNA NNLNLGGSMV SSSSGLIYCT DPVLPPAAGD NYSNLNWVFG AKPFSQNNNN 300 NHGDEDGEDL DENEKLVRAT GGGASSMYRH QLLQQLNHSQ MANMSATALL QKAAQIGATS 360 TTTSDPSLFQ LQEGYVFKCS SGSGTAAAGC GFSAGTVNPI MEVELEGMYP AKRRRTDQCE 420 QEPGTGTGTG TGGQTRDFLG VGAHTTISHA SSINGWI

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MMEKMDDEEF SNCFLQIPAA GSNPSLAKKK RNLPGNPDPE AEVVALSPKT LMATNRFVCE  60
ICGKGFQRDQ NLQLHRRGHN LPWKLKQRSS KEPRKRVYVC PEKSCVHHHP SRALGDLTGI  120
KKHFCRKHGE KKWRCDKCSK RYAVQSDWKA HSKTCGTREY KCDCGTLFSR RDSFITHRAF  180
CDALAEETAR VNYAATSISN AANNNFNYQF MGGGTESALF MPQPQHYFPA ASIFKPIISG  240
NEGRTSLRNA NNLNLGGSMV SSSSGLIYCT DPVLPPAAGD NYSNLNWVFG AKPFSQNNNN  300
NHGDEDGEDL DENEKLVRAT GGGASSMYRH QLLQQLNHSQ MANMSATALL QKAAQIGATS  360
TTTSDPSLFQ LQEGYVFKCS SGSGTAAAGC GFSAGTVNPI MEVELEGMYP AKRRRTDQCE  420
QEPGTGTGTG TGGQTRDFLG VGAHTTISHA SSINGWI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-127	C2H2 family protein