PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022139983.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family ARF
Protein Properties Length: 910aa    MW: 101019 Da    PI: 6.4355
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022139983.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.5e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++++
  XP_022139983.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSMQPPA-QELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDAVLFI--WNEK 218
                     99*****************************9445444.38************************************************..8899 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_022139983.1 219 NQLLLGIRRA 228
                     999****997 PP
2Auxin_resp118.84.4e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F++++nPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  XP_022139983.1 253 AAHAAATNSRFTIFFNPRASPSEFVIPLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 910 aa     Download sequence    
MRLSAAGFSP QAPEGERRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNRE  60
VDAQIPNYPS LPPQLICQLH NLTMHADAET DEVYAQMTLQ PLSAQELKEA YLPAELGTPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSM QPPAQELIAK DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSIFV SAKRLVAGDA VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFFNPR ASPSEFVIPL SKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPTA LPSFGIKDSD FSMNSPFMWI RGDNSDRGIP CLNFQGTGVS  420
PWMQPRLDTS MIGMQPDMYQ AMATAALQEM RAIDYSKIAP TSLLQFQHPQ GLPCQSSTLM  480
QPQMLNQSQP QQAFLQSIQE NQQHSQSQAQ VQTQSHHLQQ QLQPQQSFNN QQQQHQQQQQ  540
QQPRQPQSQP QPLVDHQPIP CTIPAISQFA SCSQSQSPSL QTVPSLCQQP SFSDSNGNPV  600
TSPTVSPLHS LAGSFVQDES SQLLNIQRTS SIIPSAGWPS KRAAIDPLST GASQYFLPQV  660
DNLGTSQSSI SQNTVALPPF PGRECSIDRD EGSDPQNHVL FGVNIDSSSL LMQNGMSNLR  720
GVGNDSVSTT LPFSSNYMST AVTDFSVNPT MTSSNCINES GFLQSHENVG QVNPSNGTFV  780
KVHKSGSYSR SLDISKFNSY PELRSELARM FSLEGELEDP LRSGWQLVFV DRENDVLLLG  840
DGPWPEFVNS VWCIKILSPE EVQEMGKRGL ELLNSVPIQR LSNSTCDDYG SRQDSRNLIS  900
GITSVGPLDY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein