PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022138248.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

bHLH

Protein Properties

Length: 543aa MW: 59270.9 Da PI: 7.6233

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022138248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.6e-08	360	407	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_022138248.1 360 SHSLAERVRREKISKRMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 407 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MEREFFMNDG CNFYGMEIQP NELNSSGLFN NANWENSMDQ SDLFESTLSS IVSSPVNSHA 60 GGDNVMMREL IGRLGSICNS GDISPHSYIG GTNNNSTNTS CYNTPMNSPP KHNLSPIMES 120 QMRGNLSVGG NLVPHQNLAP FSADPGFAER AARFSCFGSR NLGSLNGQFS SNETQELGNR 180 SVPGGGVESG KLSRVSSNKS FNIAGIGSQM GVVQEGNQSP MQKGNSMPNK KLNRFSRSST 240 PENAGDSREG SSVSEQITAR ELGFKGKAEA NTRKRKSVHT GEAKDVKAAG ENHESTGKKI 300 KPEEVSKKEM DAAKGKAEAK DGTKTSGDAN QKQTNDNSKP PEPPKDYIHV RARRGQATDS 360 HSLAERVRRE KISKRMKFLQ DLVPGCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLSTV 420 NPRMDFNMET LLPKDIFKCP GSAPHTVYPS DSSMPTFTYE YQSMHMPPLH SAISNGTEKQ 480 FSVASASDAM QRNLSGQVPS GYSEVGNGIQ ISKFWEDELH TVVQMGYGQN QVQNANDEMK 540 SEL

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MEREFFMNDG CNFYGMEIQP NELNSSGLFN NANWENSMDQ SDLFESTLSS IVSSPVNSHA  60
GGDNVMMREL IGRLGSICNS GDISPHSYIG GTNNNSTNTS CYNTPMNSPP KHNLSPIMES  120
QMRGNLSVGG NLVPHQNLAP FSADPGFAER AARFSCFGSR NLGSLNGQFS SNETQELGNR  180
SVPGGGVESG KLSRVSSNKS FNIAGIGSQM GVVQEGNQSP MQKGNSMPNK KLNRFSRSST  240
PENAGDSREG SSVSEQITAR ELGFKGKAEA NTRKRKSVHT GEAKDVKAAG ENHESTGKKI  300
KPEEVSKKEM DAAKGKAEAK DGTKTSGDAN QKQTNDNSKP PEPPKDYIHV RARRGQATDS  360
HSLAERVRRE KISKRMKFLQ DLVPGCNKVT GKAVMLDEII NYVQSLQRQV EFLSMKLSTV  420
NPRMDFNMET LLPKDIFKCP GSAPHTVYPS DSSMPTFTYE YQSMHMPPLH SAISNGTEKQ  480
FSVASASDAM QRNLSGQVPS GYSEVGNGIQ ISKFWEDELH TVVQMGYGQN QVQNANDEMK  540
SEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	277	TRKRKS
2	273	301	RKRKSVHTGEAKDVKAAGENHESTGKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-62	bHLH family protein