PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022138015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
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Family | C3H | ||||||||
Protein Properties | Length: 482aa MW: 51837.9 Da PI: 8.4569 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.4 | 4.2e-12 | 49 | 73 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H++ XP_022138015.1 49 EADCIYYLRTGFCGYGSRCRFNHPR 73 789********************96 PP | |||||||
2 | zf-CCCH | 37.9 | 2.9e-12 | 95 | 119 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_022138015.1 95 QPVCQYYMRTGMCKFGSSCKYHHPQ 119 689********************97 PP | |||||||
3 | zf-CCCH | 35.8 | 1.3e-11 | 142 | 167 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++++G+Ck+G++CkF+H++ XP_022138015.1 142 GEKECSYYLKNGQCKFGATCKFHHPE 167 6789********************96 PP | |||||||
4 | zf-CCCH | 34 | 5.1e-11 | 305 | 331 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+ ++C+++H+p XP_022138015.1 305 PGQPECQYYMRTGDCKFESSCRYHHPP 331 5789*********************97 PP | |||||||
5 | zf-CCCH | 33.6 | 6.5e-11 | 353 | 377 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G Ck+G+ CkF H++ XP_022138015.1 353 APPCTHFMQRGMCKFGPACKFDHSM 377 689********************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence |
MKPYGQSIDA SHSDPSPEWT APGPDTAHGE PLWQLGSRER ESYPERPEEA DCIYYLRTGF 60 CGYGSRCRFN HPRERTAVLG GSRPGGREYP ERIGQPVCQY YMRTGMCKFG SSCKYHHPQQ 120 DKGSLSPVSL NFYGYPLRPL QGEKECSYYL KNGQCKFGAT CKFHHPEPAG LQFPAPSPVQ 180 VTPVPAPVPG PSVYPPVQSP SAHSSQQYGV ILARPSLLSS PYVHGPYGPM LVSPGVVQFP 240 SWSPYPAPMS PVASPSAQPS VGSGQLYGVA QVSPSATAYA GSYQPMPSAG PSSTSQKEHS 300 FPERPGQPEC QYYMRTGDCK FESSCRYHHP PELVASRSSV VLSQLGLPLR PGAPPCTHFM 360 QRGMCKFGPA CKFDHSMERL SYSPSASSLA DMPVAPYPVG SVAGTLAPSS SSSELRPEHF 420 SGSRKDSNPS RMSSSMSTSS GLVGSTTSRT EMHSHSSVQR SSQSSGPSVS STTSTTGVEG 480 RT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 1e-127 | C3H family protein |