PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022137157.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

M-type_MADS

Protein Properties

Length: 365aa MW: 41628.2 Da PI: 6.6474

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022137157.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.6	5e-21	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ rqvtfskRr+gi+KKA EL +LCd+++ +++fs+tg+ XP_022137157.1 10 KLESTGSRQVTFSKRRHGIMKKARELAILCDIDIVLLMFSPTGR 53 5688999***********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MGRVKLKIKK LESTGSRQVT FSKRRHGIMK KARELAILCD IDIVLLMFSP TGRPAFYQGE 60 RSTIEEVITK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIKDFVGSS SQDFEELTNE 120 VSMLRDQIAE AHKRLSYWRN PDNINNIEHL QQMEDMIRES LNQTRLHKEN LRRHQLLSQE 180 FTSQLQSGMS LPLIMDEMQA AQPLLWLPNY GTQQITLPND PNFLQPGDVE CSMATSFPTY 240 PSYFNPGKQI EVGISGPVDS LPHGDGALNE LSGTSCSTLQ LGEQYTYPTC DGSNFQDDKR 300 LKLDMEMNLH ANCVENQLNG KLELSRSLFD NEQHHWASIP GCSIPMYQSN GYHHVGSLLT 360 AYYKT

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MGRVKLKIKK LESTGSRQVT FSKRRHGIMK KARELAILCD IDIVLLMFSP TGRPAFYQGE  60
RSTIEEVITK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIKDFVGSS SQDFEELTNE  120
VSMLRDQIAE AHKRLSYWRN PDNINNIEHL QQMEDMIRES LNQTRLHKEN LRRHQLLSQE  180
FTSQLQSGMS LPLIMDEMQA AQPLLWLPNY GTQQITLPND PNFLQPGDVE CSMATSFPTY  240
PSYFNPGKQI EVGISGPVDS LPHGDGALNE LSGTSCSTLQ LGEQYTYPTC DGSNFQDDKR  300
LKLDMEMNLH ANCVENQLNG KLELSRSLFD NEQHHWASIP GCSIPMYQSN GYHHVGSLLT  360
AYYKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	6e-99	M-type_MADS family protein