PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022136600.1
Organism
Momordica charantia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica
Family ARF
Protein Properties Length: 713aa    MW: 79560.1 Da    PI: 7.3992
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022136600.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.52.9e-24130230198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +
  XP_022136600.1 130 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGE 220
                     99****************************9643..445569************************************************..449 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++el+v+v+r
  XP_022136600.1 221 NGELRVGVRR 230
                     999*****98 PP
2Auxin_resp1041.8e-34256335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha+st++ F v+Y+Pra  s+F+v+++k+ +a+++k+ vGmRfkm+f +e+s+err+sGt++gv d++p +Wp+SkWrsLk
  XP_022136600.1 256 ASHAVSTQTRFVVYYKPRA--SQFIVSLNKYIEAMNNKFLVGMRFKMKFXGEESPERRFSGTIIGVDDMSP-HWPESKWRSLK 335
                     789***************8..9*************************************************.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    
MANRGGGGSF SPSNVSSQGW GGDELYTELW KASAGPLVEV PRVREKVFYF PQGHMEQLEA  60
STNQELNQKL PSFNLPSKIL CQVVDVRLLA EHESDEVYAQ ITLMPEPNLD EPISPDPSIP  120
ECSRPKVHSF CKVLTASDTS THGGFSVLRK HATECLPPLD MTQQTPTQEL VAKDLHGYEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGE NGELRVGVRR LARQQSSMPS  240
SVISSHSMHL GVLATASHAV STQTRFVVYY KPRASQFIVS LNKYIEAMNN KFLVGMRFKM  300
KFXGEESPER RFSGTIIGVD DMSPHWPESK WRSLKVQWDE LASILRPDRV SPWEIEPFVA  360
PTSPNMVQSV PIKNKRPRPP LEIPDSDNST VTTLRHPGST QAHDDRTQLT AAATDIKRFE  420
NHVTWHYKQT DVSSNGNSIS RTPNEGSWLT SPNASVSQHR LQDFTEDRKS NSVWSAVFPG  480
APTGHSGCAT PRSPNPKNDQ IHDLGGKGRK TEVASSCRLF GIELINHSKS SVPSERAADQ  540
PITAANEITE SHANTSHVNT LLSSNAEQNS DLPKASKERK LGLLQAPPKE IQHKQNSSTN  600
SRSRTKVQMQ GMAVGRAVDL TTLEGYGQLI DELEKMFDIK GELRPRDKWE IVFTDDEGDT  660
MLMGDYPWQE FCNMVRRIYI WSSQDVKMSS GSKLTMSAME GDGTVITSES ADS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1375379KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein