PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022136443.1

Organism

Momordica charantia

Taxonomic ID

3673

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Momordiceae; Momordica

Family

C2H2

Protein Properties

Length: 406aa MW: 43141.1 Da PI: 9.8774

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022136443.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_022136443.1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.1	0.0012	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + ks+ k H + + XP_022136443.1 137 WKCDKCSKKYAVKSDWKAHFKIC 159 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MPMELDNSST ASGEASISSS GNQPPPPKSN AKKKRNLPGM PDPDAEVIAL SPKALLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTGKEVKKK VYVCPEPSCV HHHPTRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVKS DWKAHFKICG TREYKCDCET VFSRRDSFIT 180 HRAFCDVLTK ETAAGSPSPA AAENPNLESD PKVQPPGSSS PPPSAPPPPP AAAPIVPPPS 240 TDAISSIQNK AMDSPENRPP QLGEPPIRIA LSGSSGGSTT TIGSTNATVL ASLFASSAAS 300 LSLQPPQPPA FSDLLRAMTR PDRPAEIAAP LVFEPLSLCL STHNGSSLFG TGIQERRPYA 360 PPPQPAMSAT GLLQKAAQIG AAAASTSVFR GLGLSSSSSS AQQGSL

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MPMELDNSST ASGEASISSS GNQPPPPKSN AKKKRNLPGM PDPDAEVIAL SPKALLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRTGKEVKKK VYVCPEPSCV HHHPTRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVKS DWKAHFKICG TREYKCDCET VFSRRDSFIT  180
HRAFCDVLTK ETAAGSPSPA AAENPNLESD PKVQPPGSSS PPPSAPPPPP AAAPIVPPPS  240
TDAISSIQNK AMDSPENRPP QLGEPPIRIA LSGSSGGSTT TIGSTNATVL ASLFASSAAS  300
LSLQPPQPPA FSDLLRAMTR PDRPAEIAAP LVFEPLSLCL STHNGSSLFG TGIQERRPYA  360
PPPQPAMSAT GLLQKAAQIG AAAASTSVFR GLGLSSSSSS AQQGSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-105	C2H2 family protein